Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1531g00005 ATGGGTGGTGTTGCATGGACAGAAGAAGAAGATGACTTGCTTAAGAAATGCATACAACAATATGGAGAAGGAAAGTGGCATCGGGTTCCTCTGTTGGCAGGTCTAAACAGGTGCCGAAAGAGTTGTAGGCTAAGATGGCTCAACTATCTCCGTCCAAACATCAAAAGGGGAAATTTTGCTGAGGAAGAAGTGGAAATGATTGTCAAACTCCACAAATTATTAGGCAACAGGTGGTCACTAATTGCTGGAAGGCTACCTGGAAGGACTGCTAATGATGTGAAAAACTATTGGAACTGTCATCTGAGTAAAAAACTAAATGCACTAGAAGCTGAAGACAGAGAAATAACCAGAGATGTTCAAGTGATTAGGTCCCAGCCAAGAAACATTGGTTCAAGCTCAGTGAAGAGGAGCCAGGTTGAGACTCCAACTGACAAAGTAGTTCAACAAGAGAGTGGCGTATCCTCACTAACATTTGATGCTGATGGTCAGAGCCATATGCTTGAATCACAGCATGACAACATATATTCATGCTTGGACCAACAGGGCATTGTTGGTGACTTGCCAATGGACTTTCAATTCGAAGGATTTGAAGCAATGATAAACGGAGAAGGTAGTAGCAGCCAATGGGATTGGGATGACTTGCTCTTAGACATGGATATGTATAATGATTTTTTTTCTTAA 681 0.4185 MGGVAWTEEEDDLLKKCIQQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYLRPNIKRGNFAEEEVEMIVKLHKLLGNRWSLIAGRLPGRTANDVKNYWNCHLSKKLNALEAEDREITRDVQVIRSQPRNIGSSSVKRSQVETPTDKVVQQESGVSSLTFDADGQSHMLESQHDNIYSCLDQQGIVGDLPMDFQFEGFEAMINGEGSSSQWDWDDLLLDMDMYNDFFS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1531g00005 226 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Gabi1531g00005 226 Pfam Myb-like DNA-binding domain 56 98 IPR001005 -
Gabi1531g00005 226 Gene3D - 58 123 - -
Gabi1531g00005 226 FunFam Myb transcription factor 3 55 - -
Gabi1531g00005 226 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 148 - -
Gabi1531g00005 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Gabi1531g00005 226 ProSiteProfiles Myb-like domain profile. 6 50 IPR001005 -
Gabi1531g00005 226 Gene3D - 4 55 - -
Gabi1531g00005 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Gabi1531g00005 226 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Gabi1531g00005 226 SUPERFAMILY Homeodomain-like 5 97 IPR009057 -
Gabi1531g00005 226 SMART sant 55 103 IPR001005 -
Gabi1531g00005 226 SMART sant 2 52 IPR001005 -
Gabi1531g00005 226 CDD SANT 58 101 IPR001005 -
Gabi1531g00005 226 CDD SANT 5 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1531g00005 Gabi-Chr1531 91517 94043 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1531g00005 5 167 MYB Transcription Factor Family AT1G66370 50.829 6.51e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1531g00005 Myb_DNA-binding 8.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1531g00005 K09422 - gmx:100798101 376.711