Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1529g00014 ATGGATCAACAACTCTTATCAGACAAAAGCTTTCCACTCTTCAAAACAACTCGCAAACCCTCCAAAAACCCCTCAACCGCCGCCGCTACCGCCGTAAAAAACCCTAACTCCCACGCCGAAGGTCACGAAAACCACCAAGACACCTCCACCGTCGCTGCCACCACATTCGCCGATCTCGGACTCTCCGAATGGGTGGTGAAGACCTGCAAGGAGCTCGGAATGCGGAAGCCGCGGCCCGTGCAGTCCACGTGCATCCCGAGGGTCCTGGAGGGCCGCCACGTGTTCGGCATCGACGAGACCGGTAGCGGCAAGACCGCCGCGTTCGCCCTCCCGATCCTCCACCGCCTCGCGGAGCATCCGTTCGGGGTCTTCGCCCTGGTCGTCACGCCCACGCGCGAGCTAGCGTTTCAGCTCGCGGAGCAGTTCCGCGCCCTCGGCTCCTCCCTTCACCCCCGCATCTCGGTGGTGGTCGGAGGCATGGACATGCTCAAACAGACCAAGGAATTGGTCGCTAGGCCTCACCTCGTTATCGCCACCCCTGGGAGGATCAAGCTCTTGCTCCAAGATAATCCTGATATTCCTCCCATTTTCTCTAGAACAAAGTTCCTTGTCTTGGATGAAGCAGATCGAGTCCTGGATGTTGGTTTTCAGGAGGAATTGAAAGTTATCTTTCAGTGCTTACCAGAAAATCGGCAAAACCTGTTCTTTTCTGCAACATCAACAAGTAATCTGCAAAAGTTGCGTGAACGTTACCAAGATAAGCTTTATGTCTATGAAGCATATGAAGGCTTAAAAACAGTTGAGACACTTGAACAACAAGTTATATTCATCCCTAAAAAGGTGAAGGAAGTATATTTGATGCATATTTTGTCTAAAATGGAAGATATGGGCATTCGGTCTGCCATTGTATTTATCTCCACATGCAGAGATTGTCACCGTTTAAATTTAATGCTGGAAGTGCTTGATCAAGAAGCTGCAGCTCTATATTCATTCAAATCACAGACTCAGAGGCTTGATGCACTTCATCAATTCAAATCAGGAAAGGTTTCTATACTACTAGCAACTGATGTTGCCAGCCGTGGCTTGGATATTCCTACAGTTGATCTAGTTATCAATTTCGATGTTCCAAGGTTTCCACGTGATTATATTCATCGTGTTGGCCGTACTGCAAGAGCAGGAAGAGGAGGACTTGCTTTGAGCCTTGTCACCCAGAATGATATCGATCTTGTTCGTGAAATAGAAGCTCTTATCGACAGGCAACTAGAAATGATTGAATACAAAGAAAATGAGGTGTTATCTCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTGGCAGAAATGAAGATGATGGAAGATGGCTTTGACGAGAAAGCAAAGGAGCGGAAAAAACAGAAACTGAAAATGCTATCAGAGAAAGGATTGTTAAAGAAAAGAAGTAAAAAGAGAAAAAGAAATAAAGAATTTGCAGAGGAAGGAAAAAAACAGAAAAAAGTGGAGTTGGAAGCATCAGCAGACGCAGCATCACTAAAGAAAATAAGTAAGAAGAGACAGTAA 1554 0.4653 MDQQLLSDKSFPLFKTTRKPSKNPSTAAATAVKNPNSHAEGHENHQDTSTVAATTFADLGLSEWVVKTCKELGMRKPRPVQSTCIPRVLEGRHVFGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSSLHPRISVVVGGMDMLKQTKELVARPHLVIATPGRIKLLLQDNPDIPPIFSRTKFLVLDEADRVLDVGFQEELKVIFQCLPENRQNLFFSATSTSNLQKLRERYQDKLYVYEAYEGLKTVETLEQQVIFIPKKVKEVYLMHILSKMEDMGIRSAIVFISTCRDCHRLNLMLEVLDQEAAALYSFKSQTQRLDALHQFKSGKVSILLATDVASRGLDIPTVDLVINFDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDIDLVREIEALIDRQLEMIEYKENEVLSLMKKVFSAKNVAEMKMMEDGFDEKAKERKKQKLKMLSEKGLLKKRSKKRKRNKEFAEEGKKQKKVELEASADAASLKKISKKRQ 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1529g00014 517 Gene3D - 265 515 IPR027417 -
Gabi1529g00014 517 Pfam Helicase conserved C-terminal domain 298 393 IPR001650 -
Gabi1529g00014 517 Gene3D - 16 258 IPR027417 -
Gabi1529g00014 517 CDD SF2_C_DEAD 270 402 - -
Gabi1529g00014 517 MobiDBLite consensus disorder prediction 460 496 - -
Gabi1529g00014 517 Pfam DEAD/DEAH box helicase 79 247 IPR011545 GO:0003676|GO:0005524
Gabi1529g00014 517 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 85 258 IPR014001 -
Gabi1529g00014 517 SMART ultradead3 73 273 IPR014001 -
Gabi1529g00014 517 MobiDBLite consensus disorder prediction 1 33 - -
Gabi1529g00014 517 CDD DEADc_DDX49 56 259 - -
Gabi1529g00014 517 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 204 212 IPR000629 -
Gabi1529g00014 517 MobiDBLite consensus disorder prediction 1 48 - -
Gabi1529g00014 517 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 37 510 - -
Gabi1529g00014 517 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 54 82 IPR014014 GO:0003724
Gabi1529g00014 517 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 269 432 IPR001650 -
Gabi1529g00014 517 SMART helicmild6 312 393 IPR001650 -
Gabi1529g00014 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 413 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1529g00014 Gabi-Chr1529 211233 217271 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1529g00014 36 406 Eukaryotic Initiation Factors Gene Family AT3G13920 31.565 4.72e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1529g00014 K14778 - gmx:100804060 785.408