Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1529g00012 ATGGATAAATCAGAGCAAAATCAACAGCAGCAACAGCAACAACAGCATGTGATGGGAGTTGCAGCAGGTGCTAGCCAAATGGCCTATTCTTCTCATTACCAGACCGCTCCCTTGGTGGCTTCTGGTACATCTGCTGTCGCTATTCCTTCCCCAACACAGCCTCCAGCTGCCTTCCCTAATTCCCCTCAACAATTTGCGTACCAGCAAGCACAACATTTTCACCACCAACAGCAGCAACAGCAACAACAGCAGCTTCAAATGTTCTGGGCAAACCAAATGCAAGAAATTGAACAAACAATTGACTTTAAAAACCATAGTCTCCCACTTGCTCGGATAAAAAAAATAATGAAAGCTGATGAAGATGTCCGGATGATTTCAGCCGAAGCTCCAGTCATATTTGCAAAAGCATGTGAAATGTTCATATTGGAGTTGACTTTGCGGTCTTGGATCCACACAGAAGAGAACAAGAGGAGAACACTACAAAAGAATGATATAGCAGCTGCTATTTCAAGAAATGATGTTTTTGATTTCTTGGTTGATATCATTCCAAGAGATGAGTTGAAAGAGGAGGGACTTGGAATAACAAAGGCCACTATTCCAATAATGGGTTCTCCAGCTGATATGCCATACTATTATGTCCCACCTCAGCATCCTGTAGGACCTCCAGGGATGATCATGGGAAAGCCAGTTGATCAAGAAGCACTATATTCTACGCAGCAGCCTCGACCTCCCATGGCTTTCATGCCATGGCCACATACACAAACCCAGCAACAGCAGCCACCCCAACAGCAACAAACAGACTCTTGA 807 0.4449 MDKSEQNQQQQQQQQHVMGVAAGASQMAYSSHYQTAPLVASGTSAVAIPSPTQPPAAFPNSPQQFAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGITKATIPIMGSPADMPYYYVPPQHPVGPPGMIMGKPVDQEALYSTQQPRPPMAFMPWPHTQTQQQQPPQQQQTDS 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1529g00012 268 Pfam Core histone H2A/H2B/H3/H4 62 169 IPR007125 GO:0003677
Gabi1529g00012 268 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 59 254 - -
Gabi1529g00012 268 MobiDBLite consensus disorder prediction 250 268 - -
Gabi1529g00012 268 Gene3D Histone, subunit A 67 184 IPR009072 GO:0046982
Gabi1529g00012 268 MobiDBLite consensus disorder prediction 231 268 - -
Gabi1529g00012 268 FunFam Nuclear transcription factor Y subunit gamma 72 184 - -
Gabi1529g00012 268 SUPERFAMILY Histone-fold 66 178 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1529g00012 Gabi-Chr1529 156690 159832 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1529g00012 9 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 68.932 7.14e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gabi1529g00012 Histone 1.4e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1529g00012 K08066 - gmx:100796987 402.519