Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1529g00008 ATGTCTTGGACACGAGAAGAGAACAGACGTTTTGAGGATGCTCTTGCGGTACATGGCCCCGATGACCCCAACAGGTGGTCACATGTAGCCAACGCAGTTGGTGGAAAATCCATAGAAGAGGTGAAAAAGCACTACGAGATCCTCAAGGAGGATGTCATTCGTATAGAGCGTGATCAAATACCACTACCCAAGTACAGAGGTGCTGACATCAACGGAAGCAGGCGAATGAAGAATCTAAATCTTCAGTGA 249 0.4739 MSWTREENRRFEDALAVHGPDDPNRWSHVANAVGGKSIEEVKKHYEILKEDVIRIERDQIPLPKYRGADINGSRRMKNLNLQ 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1529g00008 82 ProSiteProfiles SANT domain profile. 1 53 IPR017884 -
Gabi1529g00008 82 FunFam Transcription factor SRM1 1 62 - -
Gabi1529g00008 82 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 2 71 IPR044636 GO:0003700
Gabi1529g00008 82 Pfam Myb-like DNA-binding domain 1 45 IPR001005 -
Gabi1529g00008 82 Gene3D - 1 51 - -
Gabi1529g00008 82 ProSiteProfiles Myb-like domain profile. 1 49 IPR001005 -
Gabi1529g00008 82 SMART sant 2 51 IPR001005 -
Gabi1529g00008 82 SUPERFAMILY Homeodomain-like 2 56 IPR009057 -
Gabi1529g00008 82 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Gabi1529g00008 82 CDD SANT 2 49 IPR001005 -
Gabi1529g00008 82 Coils Coil 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1529g00008 Gabi-Chr1529 97177 98802 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi1529g00008 Myb_DNA-binding 3.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1529g00008 - - gmx:100789698 140.198