Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1529g00001 ATGGGTGCTTGCTTTAGCAATCGGATTACGGCTGTGAGTCCTTCCATTACAGGGTTCACTTCTAGAAGTGTAAGCAGGAGTGGCCATGACATCAGCTCAAATAGCAGTAACTCATCAGCCTCCATATCTGTCACTTCTAGAAGTGAGGGTGAGATCTTGCAATCTTCCAATTTAAAAAGCTTCAGCTACAGTGAACTAAGAGGAGCCACAAGAAATTTCTGCCCAGATAGTGTCTTAGGGGAGGGTGGATTTGGTTATGTTTTTAAGGGCTGGATTGATGAGCATTCACTTGCCGCTACCAAACCAGGAATCGACATGATTGTTGCTGTAAAGAGGCTTAAACAAGAGGGCTTCCAGGGTCACAAAGAATGGTTGGCTGAAATCAACTATCTTGGGCAACTGCATCATTCTAATCTTGTCAAGTTAATAGGATACTGCTTCGAGGATGAGCATCGACTTCTGGTTTATGAATTTATGCCTAAGGGCAGCATGGAGAATCATCTGTTCAGAAGAGGTTCTTATTATCAGCCATTCTCTTGGAGTTTACGATTGAAAATAGCCCTTGAGGCTGCAAGGTGTCTTGCTTTTCTCCATAGTACAGAACCTAAAGTCATATACCGTGACTTTAAAACTTCAAATATCCTACTTGATACTATATGTACATAA 666 0.4189 MGACFSNRITAVSPSITGFTSRSVSRSGHDISSNSSNSSASISVTSRSEGEILQSSNLKSFSYSELRGATRNFCPDSVLGEGGFGYVFKGWIDEHSLAATKPGIDMIVAVKRLKQEGFQGHKEWLAEINYLGQLHHSNLVKLIGYCFEDEHRLLVYEFMPKGSMENHLFRRGSYYQPFSWSLRLKIALEAARCLAFLHSTEPKVIYRDFKTSNILLDTICT 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1529g00001 221 ProSiteProfiles Protein kinase domain profile. 73 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1529g00001 221 FunFam Serine/threonine-protein kinase BIK1 39 158 - -
Gabi1529g00001 221 MobiDBLite consensus disorder prediction 19 42 - -
Gabi1529g00001 221 Pfam Protein tyrosine and serine/threonine kinase 77 217 IPR001245 GO:0004672|GO:0006468
Gabi1529g00001 221 PANTHER OS01G0588500 PROTEIN-RELATED 36 218 - -
Gabi1529g00001 221 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Gabi1529g00001 221 Gene3D Transferase(Phosphotransferase) domain 1 159 220 - -
Gabi1529g00001 221 Gene3D Phosphorylase Kinase; domain 1 47 158 - -
Gabi1529g00001 221 ProSitePatterns Protein kinases ATP-binding region signature. 79 111 IPR017441 GO:0005524
Gabi1529g00001 221 SUPERFAMILY Protein kinase-like (PK-like) 39 217 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1529g00001 Gabi-Chr1529 42637 44464 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1529g00001 22 217 Glycoside Hydrolase AT3G07070 40.500 1.12e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi1529g00001 PK_Tyr_Ser-Thr 3.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1529g00001 - - gmx:100793817 379.022