Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1525g00023 ATGAAGCCCTTTTGCAGATTCTTGATTCTTCTAGCGCTGTTTTCTCTCGTGGAATCTTCATGCAACAGTAAAGACCAGGGCTTGGTATCAAAGGCTTTCAAATCTGTCTCTGGGTTCAACGCTTCCACCTGGTTCCAGACAAGAGGTTCGAAGTGTTCAGAGTCTCATATCAGCAGAATAGTGCTTCCACACAAAAATCTAAGCGGGACAATTTCCTGGGGTTATCTGAGAAACATGTCCAAATTGCAGGTTCTTGATCTCTCTGGGAATTCCCTGCAAGGCCATGTGCCAAGCTGGTTTTGGTCAAGTTCAACCTTATTGGAAGTGAATCTCTCAAGGAACAGGTTCGGAGGGAGCATCATTATTGCTTCAAAACCCACATCAGAAAACACCTTATTTTCATCCATTCAAATTCTCAATCTCTCACACAACAGGTTCACCAATTCGGTTCAACTCTCTGGCTTCCAAAACCTTAAAATCCTCGACCTTTCACACAACAAGCTAGGAACAATCCTCTCAGGGTTCAAAAACCTCTCCAAGCTACAACACCTTGACCTCTCAAGCTGCAATCTCCAAGGCAACATAAAACCCATTTCTTCTATACACTCTCTTCAATACTTAGACTTATCAAACAACACATTGACCGGTGCTTTCCCTTCTGATTTCCCTCCACTTAACTCCCTCAAATTCTTCAACATCTCATACAACAACTTCAACTCTTCAATCAGCTTAAACAAGTTCAAGCAATTCAGCAAATCATCTTTCATCCACGCTGGCAACAACTTCGCCTACGACAACACCACATCCAAAACTCACAACCATCAACCACCATTCCAACCCCACATAGGAAAACAAGACATTCATCAGAAACATCCCAAACCAAAATCCAAAACACTGATTCTTGCGGTGTCTTGTGCAATATCAGCACTTGTTTTAATTCTCTTGTCCATTATGGTACTCCGCATTATTCAAAAAAAGAGGAAGAAAATTTCCAAGAGGAGCAAATGGGCAATCTCAATACCGGTCCCACAAGGCATGAACATGGTGGAAAAATCAGGACCGTTCGCTTTCGAGACCGAGTCAGGGTCCACGTGGGTGGCTGACCTGAAGGAACCATCGTCTGCGCCGGTGGTGATGTTCGAGAAGCCATTGATGAACCTTAGCTTCAAGGATCTTATTATTGCCACGTCACACTTCGGCAAGGACTCTCTGCTAGCAGAGGGAAGGTGTGGGCCCGTGTATAGGGCAGTACTGCCCGGTGACCTCCACGTGGCAATCAAGGTACTCGAACATGTCAGAGACGTTGATCATGATGAATCTGTCGCCATGTTCGTTGACCTCTCCAAGCTTAAACACCCCAACTTGTTGTCCCCTTCCGGTTACTGCATTGCAGGCAAGGAGAAGCTGCTATTGTACGAGTTTATGGCAAATGGGGATTTAGGAAGGTGGCTACACGAGCTTCCAACAGGGGACACCAACGTGGAGGACTGGACTGGCGACACGTGGGAGATTCAAAACGGTGTCGTCGAAGGATCCCCAGAAAAATTAGGGTGGCTGACACGACATCGTATCGCAGTGGGAATAGCGCGTGGCCTCGCGTATCTCCACCACGCAGGGTCGAAACCCGTCGTGCACGGCCACCTCGTGACCTCAAACATTTTACTAGCCGATGATTTCAAGCCTCGGATAGCAGATTTCGGGTTTCGAATCGACCCGAACCCGAATAGCGAGACAGATGCTGACGTGTACTGCTTCGGGGTGGTGTTGATGGAGCTGCTAACGGGGAAGGCCGGCACGGCAGAGACGATTGTTGTCGTGAGGAAGGCGTGGAGAGAGGGACAAGGAGTTAGGGTATTGGACGAGAGGTTGCGACTCGGTGGTGACTCGGTGGTGAGGGAGATGGTTGAGAGCCTCCGAGTTGCTTTCCTGTGTACGGCCGATTTGCCTTCAAAGAGGCCCACAATGCAGCAGGTTTTGGGTTTGCTCAAAGACATTAGTCCTCATCAACGACTCGTCCCGAGTTGA 2025 0.48 MKPFCRFLILLALFSLVESSCNSKDQGLVSKAFKSVSGFNASTWFQTRGSKCSESHISRIVLPHKNLSGTISWGYLRNMSKLQVLDLSGNSLQGHVPSWFWSSSTLLEVNLSRNRFGGSIIIASKPTSENTLFSSIQILNLSHNRFTNSVQLSGFQNLKILDLSHNKLGTILSGFKNLSKLQHLDLSSCNLQGNIKPISSIHSLQYLDLSNNTLTGAFPSDFPPLNSLKFFNISYNNFNSSISLNKFKQFSKSSFIHAGNNFAYDNTTSKTHNHQPPFQPHIGKQDIHQKHPKPKSKTLILAVSCAISALVLILLSIMVLRIIQKKRKKISKRSKWAISIPVPQGMNMVEKSGPFAFETESGSTWVADLKEPSSAPVVMFEKPLMNLSFKDLIIATSHFGKDSLLAEGRCGPVYRAVLPGDLHVAIKVLEHVRDVDHDESVAMFVDLSKLKHPNLLSPSGYCIAGKEKLLLYEFMANGDLGRWLHELPTGDTNVEDWTGDTWEIQNGVVEGSPEKLGWLTRHRIAVGIARGLAYLHHAGSKPVVHGHLVTSNILLADDFKPRIADFGFRIDPNPNSETDADVYCFGVVLMELLTGKAGTAETIVVVRKAWREGQGVRVLDERLRLGGDSVVREMVESLRVAFLCTADLPSKRPTMQQVLGLLKDISPHQRLVPS 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1525g00023 674 Gene3D Transferase(Phosphotransferase) domain 1 475 576 - -
Gabi1525g00023 674 Gene3D Ribonuclease Inhibitor 18 128 IPR032675 -
Gabi1525g00023 674 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 50 665 - -
Gabi1525g00023 674 Pfam Leucine rich repeat 60 116 IPR001611 GO:0005515
Gabi1525g00023 674 Pfam Leucine rich repeat 135 191 IPR001611 GO:0005515
Gabi1525g00023 674 SMART LRR_typ_2 201 224 IPR003591 -
Gabi1525g00023 674 SMART LRR_typ_2 155 177 IPR003591 -
Gabi1525g00023 674 SMART LRR_typ_2 79 102 IPR003591 -
Gabi1525g00023 674 Pfam Leucine Rich Repeat 203 222 IPR001611 GO:0005515
Gabi1525g00023 674 Gene3D Phosphorylase Kinase; domain 1 359 474 - -
Gabi1525g00023 674 ProSiteProfiles Protein kinase domain profile. 399 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1525g00023 674 FunFam Putative LRR receptor-like serine/threonine-protein kinase 360 474 - -
Gabi1525g00023 674 FunFam Calmodulin-binding receptor kinase CaMRLK 134 244 - -
Gabi1525g00023 674 PRINTS Leucine-rich repeat signature 155 168 - -
Gabi1525g00023 674 PRINTS Leucine-rich repeat signature 82 95 - -
Gabi1525g00023 674 Gene3D Ribonuclease Inhibitor 129 260 IPR032675 -
Gabi1525g00023 674 ProSiteProfiles Leucine-rich repeat profile. 157 179 IPR001611 GO:0005515
Gabi1525g00023 674 Gene3D Transferase(Phosphotransferase) domain 1 577 671 - -
Gabi1525g00023 674 Pfam Protein tyrosine and serine/threonine kinase 403 571 IPR001245 GO:0004672|GO:0006468
Gabi1525g00023 674 SUPERFAMILY Protein kinase-like (PK-like) 376 665 IPR011009 -
Gabi1525g00023 674 SUPERFAMILY L domain-like 52 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1525g00023 Gabi-Chr1525 184031 187394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1525g00023 59 665 Receptor kinase-like Gene Family AT5G07280 31.125 4.55e-69 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Gabi1525g00023 PK_Tyr_Ser-Thr 9.8e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1525g00023 - - gmx:100788556 964.911