Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1525g00021 ATGGCAGAATGTGTTGTGGGGACTGGGTCATTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCCATTAAGAAGGTTTTACAGGACAGAAGATATAAGAATCGTGAGCTGCATCTAATGCGCATGATGGATCATCCAAATGTGATCTCTCTGAAGCATTGTTTCTTTTCCACCACAAGTACAGATGAACTTTTTCTTAATTTGGTGATGGAATATGTTCCAGAGTCTTTGTATCGAGTCTTGAAGTTCTACAGTAATGCTAATCAAAGAGTGCCACTTATTTATGTAAAACTTTATATGTACCAGATTTTCAGGGGGCTGGCTTATATCCACACTGTCCCTGGAGTTTCCCACAGAGATTTGAAGCCTCAAAATATACTGGTTGACCCTCTTACACACCAGGTTAAGATATGTGACTTTGGAAGTGCAAAAGTGCTGGTCAAAGGTGAAGCTAATATATCATATATATGTTCACGTTTCTATCGGGCTCCAGAACTGATATTTGGTGCCACTGAGTACACTACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTGCTTTTGGGCCAGCCATTATTTCCTGGTGAAAATGCAGTGGACCAGCTTGTAGAGATAATCAAGGTTCTTGGAACACCCACACGGGAGGAAGTCCGGTGTATGAATCCAAGCTACAATGACTTCAGGTTTCCACAGATCAAAGCACACCCATGGCACAAGATATTCCACAAAAAAATGCCTCCAGAAGCAATTGATCTTGCTTCCCGGTTGCTGCAGTACTCCCCAAGTCTTCGTTGTACTGCGCTAGAAGCATGTGCACACCCATTCTTTGATGAACTCCGTGCACCCAATGCTTGCTTGCCAAATGGTCGTCCATTTCCACCTCTATTCAACTTTAAACAAGAGTTATCTGGAGCATCTCCAGAGCTTGTTAATAAGTTGATACCTGAGCATGTGAAGCGGCAGATAGGGCTACAATATGCCCATTTGGCAGGAACATGA 1023 0.4321 MAECVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELHLMRMMDHPNVISLKHCFFSTTSTDELFLNLVMEYVPESLYRVLKFYSNANQRVPLIYVKLYMYQIFRGLAYIHTVPGVSHRDLKPQNILVDPLTHQVKICDFGSAKVLVKGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEVRCMNPSYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELRAPNACLPNGRPFPPLFNFKQELSGASPELVNKLIPEHVKRQIGLQYAHLAGT 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1525g00021 340 FunFam Glycogen synthase kinase-3 beta 1 79 - -
Gabi1525g00021 340 SUPERFAMILY Protein kinase-like (PK-like) 5 309 IPR011009 -
Gabi1525g00021 340 ProSiteProfiles Protein kinase domain profile. 1 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1525g00021 340 ProSitePatterns Protein kinases ATP-binding region signature. 6 30 IPR017441 GO:0005524
Gabi1525g00021 340 Gene3D Transferase(Phosphotransferase) domain 1 80 327 - -
Gabi1525g00021 340 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 329 - -
Gabi1525g00021 340 Pfam Protein kinase domain 5 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1525g00021 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Gabi1525g00021 340 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Gabi1525g00021 340 FunFam Shaggy-related protein kinase kappa 80 327 - -
Gabi1525g00021 340 SMART serkin_6 1 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1525g00021 340 CDD STKc_GSK3 3 287 IPR039192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1525g00021 Gabi-Chr1525 152653 156350 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1525g00021 6 284 MAP Kinase Gene Family AT3G59790 36.897 8.28e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gabi1525g00021 Pkinase 4.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1525g00021 K14502 - gmx:100779909 657.907