Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1525g00020 ATGTCTGCTTCTGTTGTCAATGGGAATGATTCCCTCACTGGTCACATCATATCCACTACAATTGGAGGAAAAAATGGGGAGCCCAAACAGACTATAAGTTACATGGCAGAATGTGTTGTGGGGACTGGGTCATTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCCATTAAGAAGGTTTTACAGGACAGAAGATATAAGAATCGTGAGCTGCATCTAATGCGCATGATGGATCATCCAAATGTGATCTCTCTGAAGCATTGTTTCTTTTCCACCACAAGTACAGATGAACTTTTTCTTAATTTGGTGATGGAATATGTTCCAGAGTCTTTGTATCGAGTCTTGAAGTTCTACAGTAATGCTAATCAAAGAGTGCCACTTATTTATGTAAAACTTTATATGTACCAGATTTTCAGGGGGCTGGCTTATATCCACACTGTCCCTGGAGTTTCCCACAGAGATTTGAAGCCTCAAAATATACTGGTTGACCCTCTTACACACCAGGTTAAGATATGTGACTTTGGAAGTGCAAAAGTGCTGGTCAAAGGTGAAGCTAATATATCATATATATGTTCACGTTTCTATCGGGCTCCAGAACTGATATTTGGTGCCACTGAGTACACTACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTGCTTTTGGGCCAGCCATTATTTCCTGGTGAAAATGCAGTGGACCAGCTTGTAGAGATAATCAAGGTTCTTGGAACACCCACACGGGAGGAAGTCCGGTGTATGAATCCAAGCTACAATGACTTCAGGTTTCCACAGATCAAAGCACACCCATGGCACAAGATATTCCACAAAAAAATGCCTCCAGAAGCAATTGATCTTGCTTCCCGGTTGCTGCAGTACTCCCCAAGTCTTCGTTGTACTGCGCTAGAAGCATGTGCACACCCATTCTTTGATGAACTCCGTGCACCCAATGCTTGCTTGCCAAATGGTCGTCCATTTCCACCTCTATTCAACTTTAAACAAGAGGTGAGTCATGTGAAGCGGCAGATAGGGCTACAATATGCCCATTTGGCAGGAACATGA 1086 0.4328 MSASVVNGNDSLTGHIISTTIGGKNGEPKQTISYMAECVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELHLMRMMDHPNVISLKHCFFSTTSTDELFLNLVMEYVPESLYRVLKFYSNANQRVPLIYVKLYMYQIFRGLAYIHTVPGVSHRDLKPQNILVDPLTHQVKICDFGSAKVLVKGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEVRCMNPSYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELRAPNACLPNGRPFPPLFNFKQEVSHVKRQIGLQYAHLAGT 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1525g00020 361 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 2 348 - -
Gabi1525g00020 361 Pfam Protein kinase domain 38 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1525g00020 361 SMART serkin_6 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1525g00020 361 FunFam Glycogen synthase kinase-3 beta 18 113 - -
Gabi1525g00020 361 ProSitePatterns Protein kinases ATP-binding region signature. 40 64 IPR017441 GO:0005524
Gabi1525g00020 361 CDD STKc_GSK3 29 321 IPR039192 -
Gabi1525g00020 361 Gene3D Phosphorylase Kinase; domain 1 19 113 - -
Gabi1525g00020 361 ProSiteProfiles Protein kinase domain profile. 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1525g00020 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Gabi1525g00020 361 SUPERFAMILY Protein kinase-like (PK-like) 33 344 IPR011009 -
Gabi1525g00020 361 FunFam Shaggy-related protein kinase kappa 114 356 - -
Gabi1525g00020 361 Gene3D Transferase(Phosphotransferase) domain 1 114 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1525g00020 Gabi-Chr1525 152653 156359 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1525g00020 40 318 MAP Kinase Gene Family AT3G59790 36.897 1.22e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gabi1525g00020 Pkinase 3.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1525g00020 K14502 - gmx:100779909 688.337