Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1525g00019 ATGGATGACCATAACCATAAGGAGATGTCTGCTTCTGTTGTCAATGGGAATGATTCCCTCACTGGTCACATCATATCCACTACAATTGGAGGAAAAAATGGGGAGCCCAAACAGACTATAAGTTACATGGCAGAATGTGTTGTGGGGACTGGGTCATTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCCATTAAGAAGGTTTTACAGGACAGAAGATATAAGAATCGTGAGCTGCATCTAATGCGCATGATGGATCATCCAAATGTGATCTCTCTGAAGCATTGTTTCTTTTCCACCACAAGTACAGATGAACTTTTTCTTAATTTGGTGATGGAATATGTTCCAGAGTCTTTGTATCGAGTCTTGAAGTTCTACAGTAATGCTAATCAAAGAGTGCCACTTATTTATGTAAAACTTTATATGTACCAGATTTTCAGGGGGCTGGCTTATATCCACACTGTCCCTGGAGTTTCCCACAGAGATTTGAAGCCTCAAAATATACTGGTTGACCCTCTTACACACCAGGTTAAGATATGTGACTTTGGAAGTGCAAAAGTGCTGGTCAAAGGTGAAGCTAATATATCATATATATGTTCACGTTTCTATCGGGCTCCAGAACTGATATTTGGTGCCACTGAGTACACTACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTGCTTTTGGGCCAGCCATTATTTCCTGGTGAAAATGCAGTGGACCAGCTTGTAGAGATAATCAAGGTTCTTGGAACACCCACACGGGAGGAAGTCCGGTGTATGAATCCAAGCTACAATGACTTCAGGTTTCCACAGATCAAAGCACACCCATGGCACAAGATATTCCACAAAAAAATGCCTCCAGAAGCAATTGATCTTGCTTCCCGGTTGCTGCAGTACTCCCCAAGTCTTCGTTGTACTGCGCTAGAAGCATGTGCACACCCATTCTTTGATGAACTCCGTGCACCCAATGCTTGCTTGCCAAATGGTCGTCCATTTCCACCTCTATTCAACTTTAAACAAGAGTTATCTGGAGCATCTCCAGAGCTTGTTAATAAGTTGATACCTGAGCATGTGAAGCGGCAGATAGGGCTACAATATGCCCATTTGGCAGGAACATGA 1149 0.4308 MDDHNHKEMSASVVNGNDSLTGHIISTTIGGKNGEPKQTISYMAECVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELHLMRMMDHPNVISLKHCFFSTTSTDELFLNLVMEYVPESLYRVLKFYSNANQRVPLIYVKLYMYQIFRGLAYIHTVPGVSHRDLKPQNILVDPLTHQVKICDFGSAKVLVKGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEVRCMNPSYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELRAPNACLPNGRPFPPLFNFKQELSGASPELVNKLIPEHVKRQIGLQYAHLAGT 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1525g00019 382 Gene3D Transferase(Phosphotransferase) domain 1 122 369 - -
Gabi1525g00019 382 ProSitePatterns Protein kinases ATP-binding region signature. 48 72 IPR017441 GO:0005524
Gabi1525g00019 382 SMART serkin_6 42 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1525g00019 382 FunFam Glycogen synthase kinase-3 beta 26 121 - -
Gabi1525g00019 382 Pfam Protein kinase domain 46 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1525g00019 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Gabi1525g00019 382 ProSiteProfiles Protein kinase domain profile. 42 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1525g00019 382 CDD STKc_GSK3 37 329 IPR039192 -
Gabi1525g00019 382 Gene3D Phosphorylase Kinase; domain 1 27 121 - -
Gabi1525g00019 382 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 6 371 - -
Gabi1525g00019 382 FunFam Shaggy-related protein kinase kappa 122 369 - -
Gabi1525g00019 382 SUPERFAMILY Protein kinase-like (PK-like) 41 350 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1525g00019 Gabi-Chr1525 152653 157511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1525g00019 48 326 MAP Kinase Gene Family AT3G59790 36.897 2.07e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gabi1525g00019 Pkinase 3.9e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1525g00019 K14502 - gmx:100779909 726.472