Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1525g00018 ATGGACCAGACAAGAAGCAAAGGCAGTGGTGAGGTATTGGATCATGTTGATGAAGGGGTGGATGAGAATTTGGGCCATTTGGTTGAAGGAGTTGCAATTGATGCAGGAGCTGGCCATAGCTTGGGCTACAGAGTTAGTATAAATGGGGAAGATAGGACTTCAGAAGTTATGTGCAATGATCTCGGATTGAATAAGGAGCTGAAGGAGGGATCTCAAGAAGTTAAAGGTCAGGACATGGGTGACCCACAAAAAATCAATGATACATTGCAAGGGGTTGATCAAGGAACTAGCTATAATTCTAGAAATTCAGTTACTAGGGAAGTACTTGAGACCTGTGTTGTAATAGATTCTTCTTCTCAGATTGAGAATGCCAATGCAGATAATATGAAATCGGAAGCAAAAGATAATGAATTAAGGTTGAGCAAGGTATCCATGAAAGCACCACAGAAAGGAGTGTCCGAGACAGATAAAAATTCATGTGTGATTGATGTAAACTGCGGTGGCTGCAAAGGGTTTAGTGAGAGCTTGGAAGGTGAAATGATTTGTAGGATTTGCCATCTGTCCTCTGGGCAACCATTAGAAGCAACAGCTGTTGGCACTGCAAATAGGGTTAATACTAGTACAGATTTGATTCAGCTTGGTTGTGCATGTAAAGATGAGCTAGGCATTGCGCACAGTCATTGTGCTGAGGCATGGTTCAAGATTAAAGGAAACAGGTTGTGTGAAATATGTGGTGAGACTGCGAAAAATGTTTCGGATGTTACTGGTAATGAATTTATGGAAGAGTGGAATGAAAGTAGATTCATGGAAAGTGATGTTACCTCATCTGGCGGGTTTGGTGGGTGCTGGCGTGGACAGCCATTTTGTAACTTCTTGATGGCGTGCCTGGTAATAGCTTTTGTTCTGCCATGGTTCTTTCGTATAAATATGTTCTAG 936 0.4199 MDQTRSKGSGEVLDHVDEGVDENLGHLVEGVAIDAGAGHSLGYRVSINGEDRTSEVMCNDLGLNKELKEGSQEVKGQDMGDPQKINDTLQGVDQGTSYNSRNSVTREVLETCVVIDSSSQIENANADNMKSEAKDNELRLSKVSMKAPQKGVSETDKNSCVIDVNCGGCKGFSESLEGEMICRICHLSSGQPLEATAVGTANRVNTSTDLIQLGCACKDELGIAHSHCAEAWFKIKGNRLCEICGETAKNVSDVTGNEFMEEWNESRFMESDVTSSGGFGGCWRGQPFCNFLMACLVIAFVLPWFFRINMF 311
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi1525g00018 311 MobiDBLite consensus disorder prediction 70 99 - -
Gabi1525g00018 311 MobiDBLite consensus disorder prediction 83 99 - -
Gabi1525g00018 311 SMART ringv_2 181 245 IPR011016 GO:0008270
Gabi1525g00018 311 SUPERFAMILY RING/U-box 179 247 - -
Gabi1525g00018 311 Pfam RING-variant domain 199 244 IPR011016 GO:0008270
Gabi1525g00018 311 PANTHER ZINC FINGER, RING-CH-TYPE 89 311 - -
Gabi1525g00018 311 ProSiteProfiles Zinc finger RING-CH-type profile. 174 251 IPR011016 GO:0008270
Gabi1525g00018 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 256 IPR013083 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi1525g00018 Gabi-Chr1525 132860 135924 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1525g00018 109 310 C3H Transcription Factor Family AT5G05830 35.714 5.07e-28 106