Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1525g00008 ATGGTTGCAGTAAATGATGGAATCCGCAGCAGAAAGAAGGCATCATCAAGAGGAGATAACAGGTTTGTTGGTGTAAGACAAAGACCCTCAGGGAGATGGGTGTCAGTGATTAAGGACTCATTTAAAAAGGTTAGGCTTTGGCTTGGAACATTTGACACAGCTGAGGATGCAGCTCTTGCATATGACAATGCTGCTCGTGCTTTGCGTGGTGCCAATGCTCGCACCAACTTTGATTTGCCAGAATCTGCAACCCCTTGTGGTGGTGGTGGTCCCAACTACATGCCAGATATCATTGAGCCTTTTTCATTTGAGGATGTGTGTGAGCCAGGTGAAGGTGAAGGTGCTGGTGGCCTTCTTGGTGCACTCAAGGCTAAACTGATTCATGAAAAGGGGTTGAAGTTTCCCTCACATGCTAGTTCCCCAATTGCTGGTGTTGAATCTAGTGCTGCAAGATCAACTCAGAAGTATAATGGGAAAAAAGAGCTATCATCATCTGGTTCTGACTTCCCTCGGATGAATGGAAGTTCAAGCAGCACTGTGCCGGGTTTAACTTGTACTTTATCAAACACTTCTGCTAAGAGTGTGCTTATCCCTTATCATGATGAAGGTGCTCTAGCATGCAATGATGCTGGAGTCAACTCAAATCAAATTTCTCAACCTCCACCCATGACAAGTGTGAGTTGGTCCAATGAAATAGTAGTATATGATATGCCTTGGCCTACACAGATTTGTCAAGTTCCTGAAAGTAGCTTGTTTGCCCCTGTAAGTGCAGGCACCTCTACAAGCCCACTTTCTGGGGTCCATGAGTCCACTATTGGTATGAAAAATTCAGATCTTAGGCCTTCAATTGGTAACAGAAGTGACCAAGTCAATGTAATGGGCATGCAATTGCCTCTAATTGGTGGAGCAACAACTGAAGGATTTTGGACACCCAAGCACACTCAATTCGTGCTGTGTGAGAACAGCAGTTGGTTTGGTTCTAGTGGCTCATGGGATCCTGTTCTCTCTGTGTCCTCTGAGCTAGCTTGA 1029 0.4529 MVAVNDGIRSRKKASSRGDNRFVGVRQRPSGRWVSVIKDSFKKVRLWLGTFDTAEDAALAYDNAARALRGANARTNFDLPESATPCGGGGPNYMPDIIEPFSFEDVCEPGEGEGAGGLLGALKAKLIHEKGLKFPSHASSPIAGVESSAARSTQKYNGKKELSSSGSDFPRMNGSSSSTVPGLTCTLSNTSAKSVLIPYHDEGALACNDAGVNSNQISQPPPMTSVSWSNEIVVYDMPWPTQICQVPESSLFAPVSAGTSTSPLSGVHESTIGMKNSDLRPSIGNRSDQVNVMGMQLPLIGGATTEGFWTPKHTQFVLCENSSWFGSSGSWDPVLSVSSELA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1525g00008 342 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 178 - -
Gabi1525g00008 342 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Gabi1525g00008 342 SUPERFAMILY DNA-binding domain 21 78 IPR016177 GO:0003677
Gabi1525g00008 342 CDD AP2 21 78 IPR001471 GO:0003700|GO:0006355
Gabi1525g00008 342 MobiDBLite consensus disorder prediction 1 22 - -
Gabi1525g00008 342 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Gabi1525g00008 342 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Gabi1525g00008 342 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Gabi1525g00008 342 MobiDBLite consensus disorder prediction 138 182 - -
Gabi1525g00008 342 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
Gabi1525g00008 342 MobiDBLite consensus disorder prediction 141 182 - -
Gabi1525g00008 342 FunFam ethylene-responsive transcription factor RAP2-11 20 79 - -
Gabi1525g00008 342 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1525g00008 Gabi-Chr1525 75532 76560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1525g00008 9 77 AP2-EREBP Transcription Factor Family AT5G19790 61.429 1.10e-23 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi1525g00008 AP2 4.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1525g00008 - - gmx:102661478 306.605