Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1525g00002 ATGATAATCTTAGCCACTTCCAGTGTTAAACTACCAATTTACTCTTTTGTGACAATCTTCCTTATCCTGAGCCATGTAGACTCTCAGTCTCAACTTCATGATAAAGAACATGAAGTCCTACTCAAAATAAAGCAACACCTTAAAAACCCCCCATTTCTCAATCACTGGAACCCATCAAACACCTCTCACTGCTATTGGCCAGAGATCAACTGCACCAGTGGCTCAGTCACTGGACTAGCTCTGGTCAACAACAACATCACTCAAACATTACCACCTTTCATATGTGACCTTAAAAATCTCACACATGTTGATTTCAACACCAACTTCATCCCTGGGGAGTTCCCAACTTATCTCTATAAGTGTTCCAAGCTTGAGTACCTTGACCTGTCTCTGAACAACTTTGTTGGTAACTTTCCTGATGATATTGACAACTTGGTTAACTTGAAGTATCTTAACCTTGGCTCCACAAACTTCAGTGGTGACATTCCTGCTAGTATTGCAAGGTTAAAGGAATTGAGAGTACTTAGACTTCAATATTGTCTATTTAATGGTACTTTCCCTGCTGAGATTGCCAACTTGTCCAACCTTGAAACCTTGGATTTGTCCTCTAACATGATGTTCCTTCCTTTGAGGTTGCCTACTAACTGGACCATGTTGAACAAGTTGAAGGTGTTTTATATGTATGACTGCAACTTGGTTGGGGAAATCCCTGAATCAATTGGACAAATGGTGGCTTTGGAGAAATTGGATATATCACAAAACGGTTTAACTGGAAAAATTCCTGCTGGTTTGTTCATGATGAAGAATCTGAGCATAGTGTATCTTTTCAGAAACAACCTTTGTGGAGAGATACCTGGTGTGGTTGAAGCATTGAATTTGACAGCCCTTGATCTTGCAGAAAATCATCTTACAGGGAAAATACCAGATGATTTTGGGAAGCTCCAAAAGTTAACATGGTTGAGTTTGTCTATGAATAACTTGTCAGGGGAGATACCAGAAAGCATAGGCCTTTTACCATCTCTGGTAGATTTTCGTGTCTTTTTGAACAACTTATCAGGTACTCTTCCTCCTAAACTTGGCCGCTACTCAAAGCTTCAAACCTTTCTGATTGCATATAATAGTTTTAATGGAAGGCTACCTGAGAATTTATGCTATCATGGTGAGTTACTTAATTTAACTGTTTATGAAAATAATCTGAGTGGTGAGTTGCCAGAATCACTTGGAAATTGCAGTAGCCTGCTTGATCTGAAAATTAACAGTAACGAGTTTTCTGGTAACATTCCCAGTGGACTTTGGACTTCCAATTTGGTAAATTTCATGGTAAGCCAGAATAAGTTCACTGGTGAGCTTCCTGAAAGATTGTCTTCAAGCATTACACGCTTTGAGATAAGTTACAATCAGTTTTATGGTAGAATTCCAGCTGGAGTATCTTCATGGACTAATGTGGTAGTGTTTAATGCCAGTAAGAACCACTTTAATGGAAGTATTCCACAAGAGCTAACAGCTCTTCCCAAGTTAATAACTCTGTTGCTTGATCAGAACCAACTGAGTGGGCCACTTCCATCAGTTATAATATCATGGAAGTCCCTAATAAATCTAAATTTGAGCCAAAACCAAATCTCTGGACAAATCCCAGATGCAATTGGTAGGTTACCTGGCCTTCTTCAGCTTGATTTGTCAGAAAATCAATTATCTGGCAAAGTTCCTTCTGTGCTTCCCAGACTCACAAATCTCAATCTATCCTCCAATCATTTGACAGGGAGGATACCAAGTGAATTTGAAAATTCTGAGTATTCTAGCAGCTTTTTGAACAATTCTGGCCTCTGTGCTGATACCCGAGCAGTGAACCTTACCTTGTGCAATTCTAGCCCTCAAAAGCCAACCAAAGGCTTACATTGGTCTCTTGCTTTGATTATAAGCCTGGTGGTACTAGCCTTCTTACTCACTTTGTTGACATCATTCTTGATTATGAAACTTTACAGAAAAAGAAAACAAGGATTGGGTTACTCATGGAAGCTCATTTCCTTTCAAAGGCTGAGTTTTAGAGTATCCAACATAGTGTCATCAATGACAGATCATAATATTATAGGAAGTGGTGGATTTGGTACAGTATTCCGTGTCCCAGTTGCTGATTTCGGCTATGTAGCTGTGAAAAAGATCTTTAATAACAGAAAGTTGAACCAAAAGCTTGAGAGCTCATTTCGTGCAGAAGTTAAAATATTGAGCAATATTCGTCATAACAACATTGTGAAGTTGTTGTGCAGTATCTTCAATGAGGATACAATGCTCCTTGTGTATGAGTATATGGAAAACCATAGCCTTGATAGGTGGCTGCACAAGAAGAGTAAGTCATCAGGTTCAGTCCATCATTTTGTCCTTGATTGGCCAAAGAGATTGCAAATAGCCACTGGGGTTGCCCATGGTTTGTGCTACATGCACCATGACTGTTCACCACCTATTGTTCATAGAGATGTGAAAACAAGCAACATTCTCTTGGATTCTCAATTCAATGCAAAAGTTGCTGATTTTGGTCTGGCTAGGATGTTAATGAAGCCAGGACAATTTAACACCATGTCATCTGTGATTGGCTCATTTGGCTATATGGCTCCAGAATATGTTCAAACAACTAGAGTCAGTGAAAAGATTGATGTCTTCAGCTTTGGAGTTATCCTATTGGAACTGACAACTGGTAAAGAAGCTAATTATGGTGATGAGCATTCATCTCTTGCAGAGTGGGCGTGGCGCCACATTCATGAAGGAAGCAATATAGAAGAGCTACTAGACAATGATGTCATGGAACCAAGTTACTTGGATGAAATGTGCAGTGTTTTCAAACTTGGGATCATGTGTACTGCAACACTTCCTGCTGGTAGGCCTTCCATGAAGGAGGTGGTGCACTTATTGAACCGATGTGGAGAAGGATATACTTTTGGAGAGAGGAATTATAGGCCATATGATGATGTTCCCCTTCTTAAGAATTCAAAATGGGAGTGTAAATTGGATGTTGTTGATAATTATAGTGATTGA 3027 0.3944 MIILATSSVKLPIYSFVTIFLILSHVDSQSQLHDKEHEVLLKIKQHLKNPPFLNHWNPSNTSHCYWPEINCTSGSVTGLALVNNNITQTLPPFICDLKNLTHVDFNTNFIPGEFPTYLYKCSKLEYLDLSLNNFVGNFPDDIDNLVNLKYLNLGSTNFSGDIPASIARLKELRVLRLQYCLFNGTFPAEIANLSNLETLDLSSNMMFLPLRLPTNWTMLNKLKVFYMYDCNLVGEIPESIGQMVALEKLDISQNGLTGKIPAGLFMMKNLSIVYLFRNNLCGEIPGVVEALNLTALDLAENHLTGKIPDDFGKLQKLTWLSLSMNNLSGEIPESIGLLPSLVDFRVFLNNLSGTLPPKLGRYSKLQTFLIAYNSFNGRLPENLCYHGELLNLTVYENNLSGELPESLGNCSSLLDLKINSNEFSGNIPSGLWTSNLVNFMVSQNKFTGELPERLSSSITRFEISYNQFYGRIPAGVSSWTNVVVFNASKNHFNGSIPQELTALPKLITLLLDQNQLSGPLPSVIISWKSLINLNLSQNQISGQIPDAIGRLPGLLQLDLSENQLSGKVPSVLPRLTNLNLSSNHLTGRIPSEFENSEYSSSFLNNSGLCADTRAVNLTLCNSSPQKPTKGLHWSLALIISLVVLAFLLTLLTSFLIMKLYRKRKQGLGYSWKLISFQRLSFRVSNIVSSMTDHNIIGSGGFGTVFRVPVADFGYVAVKKIFNNRKLNQKLESSFRAEVKILSNIRHNNIVKLLCSIFNEDTMLLVYEYMENHSLDRWLHKKSKSSGSVHHFVLDWPKRLQIATGVAHGLCYMHHDCSPPIVHRDVKTSNILLDSQFNAKVADFGLARMLMKPGQFNTMSSVIGSFGYMAPEYVQTTRVSEKIDVFSFGVILLELTTGKEANYGDEHSSLAEWAWRHIHEGSNIEELLDNDVMEPSYLDEMCSVFKLGIMCTATLPAGRPSMKEVVHLLNRCGEGYTFGERNYRPYDDVPLLKNSKWECKLDVVDNYSD 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1525g00002 1008 Gene3D Transferase(Phosphotransferase) domain 1 769 979 - -
Gabi1525g00002 1008 ProSiteProfiles Protein kinase domain profile. 690 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1525g00002 1008 SUPERFAMILY L domain-like 42 352 - -
Gabi1525g00002 1008 FunFam Receptor-like protein kinase HSL1 isoform A 33 184 - -
Gabi1525g00002 1008 Gene3D Ribonuclease Inhibitor 290 362 IPR032675 -
Gabi1525g00002 1008 SMART LRR_typ_2 314 338 IPR003591 -
Gabi1525g00002 1008 SMART LRR_typ_2 572 595 IPR003591 -
Gabi1525g00002 1008 SMART LRR_typ_2 193 215 IPR003591 -
Gabi1525g00002 1008 SMART LRR_typ_2 503 527 IPR003591 -
Gabi1525g00002 1008 SMART LRR_typ_2 243 267 IPR003591 -
Gabi1525g00002 1008 SUPERFAMILY Protein kinase-like (PK-like) 683 968 IPR011009 -
Gabi1525g00002 1008 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 189 289 - -
Gabi1525g00002 1008 ProSitePatterns Protein kinases ATP-binding region signature. 696 719 IPR017441 GO:0005524
Gabi1525g00002 1008 PRINTS Leucine-rich repeat signature 554 567 - -
Gabi1525g00002 1008 PRINTS Leucine-rich repeat signature 572 585 - -
Gabi1525g00002 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Gabi1525g00002 1008 SUPERFAMILY RNI-like 291 596 - -
Gabi1525g00002 1008 Pfam Protein kinase domain 692 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1525g00002 1008 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 21 963 - -
Gabi1525g00002 1008 SMART serkin_6 690 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1525g00002 1008 Gene3D Phosphorylase Kinase; domain 1 677 768 - -
Gabi1525g00002 1008 Gene3D Ribonuclease Inhibitor 186 289 IPR032675 -
Gabi1525g00002 1008 Gene3D Ribonuclease Inhibitor 33 185 IPR032675 -
Gabi1525g00002 1008 Pfam Leucine rich repeat 504 564 IPR001611 GO:0005515
Gabi1525g00002 1008 Gene3D Ribonuclease Inhibitor 364 627 IPR032675 -
Gabi1525g00002 1008 FunFam Receptor-like protein kinase HSL1 isoform A 297 620 - -
Gabi1525g00002 1008 FunFam Kinase family with leucine-rich repeat domain-containing protein 769 983 - -
Gabi1525g00002 1008 Pfam Leucine Rich Repeat 574 595 IPR001611 GO:0005515
Gabi1525g00002 1008 Pfam Leucine Rich Repeat 292 314 IPR001611 GO:0005515
Gabi1525g00002 1008 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1525g00002 Gabi-Chr1525 21941 25757 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1525g00002 30 972 Receptor kinase-like Gene Family AT5G25930 51.102 0.0 928
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi1525g00002 Pkinase 5.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1525g00002 - - gmx:100819744 1470.68