Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1525g00001 ATGAAACTAACCACCCCATCATGTGTTAAATTTCTATTCTATCTTCTTATGATATTGTTCATAATCCTCAACCATGCAAACTCTCAGTCTCCGTTGCATGATCAAGAACATGAAGTCCTATTGAAGATAAAGCAATACCTTGAAAACCCACCATTCCTTAGTCACTGGACCCCATCAAACTCTTCTCATTGTTCTTGGCCAGAGATCACTTGCACCAATGGCTCTGTCACTGGATTGGCTTTGGTTGACACCAACATCAATCAAACATTGCCACCTTTCATATGTGACCTCACAAATCTCAAACATGTTGATTTCAACTTGAATTTCATTCCTGGGGAGTTCCCAACATCTCTCTACAATTGTTCCAAGTTGGAGTACCTTGACCTTTCAATGAACAACTTTGTTGGTAAGATTCCTAATGACATTGATCGCTTGTCCAATTTGCAGTATCTTAATCTTAGTTACAACAACTTCAGTGGTGACATTCATGTGAGTATTGGATGGCTGAAGGAACTGAGATATCTTGCACTTCAAGCTTGTCTGTTTAATGGAAACTTCCCTGATGAGATTGGAAACTTGTCCAATCTTGAAACCTTGGATTTGTCCTCTAACAACATGTTCATTCCTTTGAGGTTGCCCACGAACTGGACCAAGTTGAACAAGTTGAAGGTGTTTTATATGTATGACTGCAACTTGGTTGGGGAAATCCCTGAATCAATTGGACAAATGGTGGCTTTGGAGAAATTGGATATATCACAAAACGGTTTAACTGGAAAAATTCCTGGTGGTTTATTCATGCTGAAGAATCTGAGCATAATGTTTCTTTCCAGAAACAGTCTTTCTGGGGAGTTACCTGGGGTAGTTGAAGCATTGAATTTGACTATTATTGATCTTGCACGGAATGATCTTTCAGGGAAAATACCAGATGATTTTGGAAAGCTCCAAAAGTTGACAGGGTTGAGTTTACCTCTCAATAACTTTTCAGGGGAGATACCAGAAAGCATAGGCCTTCTACCATCTCTGGTAGATTTTCATGTCTTTTTCAACAACTTATCAGGTACTCTTCCTCCTGATTTTGGCCTCTACTCAAAGCTTCAAACCTTTCTGATTGCATCTAATAGTTTTATTGGAAGGCTACCTGAGAATTTATGCTATCATGGTGAGTTACTTAATTTAACTGTTTATGAAAATAATCTGAGTGGTGAGTTGCCAGAATCACTTGGAAATTGCAGTAGCCTGCTTGATCTGAAAATTTACAGTAATGAGTTTTCTGGTAACATTCCCAGTGGACTTTGGACTTCCAATTTGGTAAATTTCATGGTAAGACAGAATAAGTTCACTGGTGAGCTTCCTGAAAGATTGTCTTCAAGCATTACACGCTTTGAGATAAGTTACAATCAGTTTTATGGTAGAATTCCAGCTGGAGTATCTTCATGGACTAATGTGGTAGTGTTTAATGCCAGTAAGAACCACTTTAATGGAAGTATTCCACAAGCGCTAACAGCTCTTCCCAAGTTAATAACTCTGTTGCTTGATCAGAACCAACTGAGTGGGCCACTTCCATCAGTTATAATATCGTGGAAGTCCCTAATAAATCTAAATTTGAGCCAAAACCAAATCTCTGGACAAATCCCAGATGCAATTGGTAGGTTACCTGTCCTTGTTCAACTTGATTTGTCAGAAAATCAATTATCTGGCAAAATTCCTTCTCTGCTTCCCAGACTCACAAATTTCAATCTATCCTCCAATCATTTGACAGGGAGGATACCAAGTGAATTTGAAAATTCTGAGTATTCTAGCAGTTTTTTGAACAATCCTGGCCTGTGTGCTGATACCCCAGCACTGAACCTTACCTTGTGCAATTCTAGCCCTCAAAGTCCAAGCAAGGACTCATCTTGGTCTCTTTCTTTGATTATAAGCCTGGTGGCAGTGGCCTGCTTATTGGCTTTGTTGACATCACTGTTTGTTATCAGACTTTGCAGAAGAAGAAAGCAAGCACTGGATAGCTCATGGAAGCTCATTTCCTTTCAAAGGCTGAATTTCACTGAATCTAGCATAGTGTCAAAAATGACAGAAAATAATATTATTGGCAGTGGTGGATATGGTACTGTGTACCGTGTTGCCGTTGATGGTTTAGGCTATGTTGCTGTGAAAAAGATTTGGGAAAACAAAAGGTTAGACAAGAATCTTGAGAGCTCATTTCATACTGAAGTTAGAATATTGAGCAACATTCGTCATAATAACATTGTGAAGTTATTGTGCTGTATCTCCAACAAGGATTCTATGCTCCTTGTCTATGAGTATTTGGAAAACCATAGCCTTGATAGGTGGCTGCACAAGAAAAGCAAGCCATCAACTGTGTCAGGTTCAATTCATCATTTTGTTCTTGATTGGCCAAAGAGATTGCATATAGCCATTGGAGCTGCCCAAGGTTTGTGCTACATGCATCATGATGTTTCACCACCTATTGTTCATAGAGATGTGAAAACAAGTAACATTCTCTTGGATTCTCAATTCAAAGCAAAAGTTGCTGATTTTGGTCTGGCTAGGATGTTAATCAAGCCTGGGGAACTTGCCACCATGTCAACTGTGATTGGTTCATTTGGCTATATGGCTCCAGAATATGTTCAAACAACTCGAGTCAGTGAAAAGATTGATGTCTTCAGCTTTGGAGTTATCCTATTGGAACTGACAACTGGTAAACAAGCTAATTATGGTGATGAGCACTCATCTCTTGCAGGGTGGGCTTGGCGCCACATTCATGAAGGAAGCAATATAGAAGAGCTACTAGACAATGATGTCACGGAACCAAGTTACTTGGATGAAATGTGTAACGTTTTCAAACTTGGGGTCATGTGTACTTCAACACTTCCTGCTAGTAGACCTTCAATGAAGGAGGTCTTGCAAGTATTGCTCAGTTGTAGAGAACCATTTGCTTATGGAGAGAGGAATATTGGCCACTATGATGTTGTTCCTCTTCTTAGAAATTCAAAAAGGGAGCACATGTTGAATGTTGATGATGACAGCTAG 3030 0.3944 MKLTTPSCVKFLFYLLMILFIILNHANSQSPLHDQEHEVLLKIKQYLENPPFLSHWTPSNSSHCSWPEITCTNGSVTGLALVDTNINQTLPPFICDLTNLKHVDFNLNFIPGEFPTSLYNCSKLEYLDLSMNNFVGKIPNDIDRLSNLQYLNLSYNNFSGDIHVSIGWLKELRYLALQACLFNGNFPDEIGNLSNLETLDLSSNNMFIPLRLPTNWTKLNKLKVFYMYDCNLVGEIPESIGQMVALEKLDISQNGLTGKIPGGLFMLKNLSIMFLSRNSLSGELPGVVEALNLTIIDLARNDLSGKIPDDFGKLQKLTGLSLPLNNFSGEIPESIGLLPSLVDFHVFFNNLSGTLPPDFGLYSKLQTFLIASNSFIGRLPENLCYHGELLNLTVYENNLSGELPESLGNCSSLLDLKIYSNEFSGNIPSGLWTSNLVNFMVRQNKFTGELPERLSSSITRFEISYNQFYGRIPAGVSSWTNVVVFNASKNHFNGSIPQALTALPKLITLLLDQNQLSGPLPSVIISWKSLINLNLSQNQISGQIPDAIGRLPVLVQLDLSENQLSGKIPSLLPRLTNFNLSSNHLTGRIPSEFENSEYSSSFLNNPGLCADTPALNLTLCNSSPQSPSKDSSWSLSLIISLVAVACLLALLTSLFVIRLCRRRKQALDSSWKLISFQRLNFTESSIVSKMTENNIIGSGGYGTVYRVAVDGLGYVAVKKIWENKRLDKNLESSFHTEVRILSNIRHNNIVKLLCCISNKDSMLLVYEYLENHSLDRWLHKKSKPSTVSGSIHHFVLDWPKRLHIAIGAAQGLCYMHHDVSPPIVHRDVKTSNILLDSQFKAKVADFGLARMLIKPGELATMSTVIGSFGYMAPEYVQTTRVSEKIDVFSFGVILLELTTGKQANYGDEHSSLAGWAWRHIHEGSNIEELLDNDVTEPSYLDEMCNVFKLGVMCTSTLPASRPSMKEVLQVLLSCREPFAYGERNIGHYDVVPLLRNSKREHMLNVDDDS 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1525g00001 1009 Gene3D Ribonuclease Inhibitor 144 212 IPR032675 -
Gabi1525g00001 1009 Pfam Leucine rich repeat 99 158 IPR001611 GO:0005515
Gabi1525g00001 1009 Gene3D Phosphorylase Kinase; domain 1 666 768 - -
Gabi1525g00001 1009 Pfam Leucine Rich Repeat 292 314 IPR001611 GO:0005515
Gabi1525g00001 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672|GO:0006468
Gabi1525g00001 1009 Gene3D Ribonuclease Inhibitor 213 360 IPR032675 -
Gabi1525g00001 1009 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Gabi1525g00001 1009 ProSitePatterns Protein kinases ATP-binding region signature. 696 719 IPR017441 GO:0005524
Gabi1525g00001 1009 FunFam Receptor-like protein kinase HSL1 isoform A 33 184 - -
Gabi1525g00001 1009 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 16 966 - -
Gabi1525g00001 1009 Pfam Protein kinase domain 692 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1525g00001 1009 Gene3D Ribonuclease Inhibitor 361 627 IPR032675 -
Gabi1525g00001 1009 SUPERFAMILY L domain-like 42 373 - -
Gabi1525g00001 1009 SUPERFAMILY RNI-like 292 595 - -
Gabi1525g00001 1009 FunFam Kinase family with leucine-rich repeat domain-containing protein 672 768 - -
Gabi1525g00001 1009 Gene3D Transferase(Phosphotransferase) domain 1 769 983 - -
Gabi1525g00001 1009 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 189 289 - -
Gabi1525g00001 1009 Gene3D Ribonuclease Inhibitor 34 143 IPR032675 -
Gabi1525g00001 1009 ProSiteProfiles Protein kinase domain profile. 690 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1525g00001 1009 SMART serkin_6 690 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1525g00001 1009 SUPERFAMILY Protein kinase-like (PK-like) 684 971 IPR011009 -
Gabi1525g00001 1009 SMART LRR_typ_2 243 267 IPR003591 -
Gabi1525g00001 1009 SMART LRR_typ_2 551 575 IPR003591 -
Gabi1525g00001 1009 SMART LRR_typ_2 193 215 IPR003591 -
Gabi1525g00001 1009 SMART LRR_typ_2 503 527 IPR003591 -
Gabi1525g00001 1009 SMART LRR_typ_2 145 169 IPR003591 -
Gabi1525g00001 1009 FunFam Kinase family with leucine-rich repeat domain-containing protein 769 987 - -
Gabi1525g00001 1009 FunFam Receptor-like protein kinase HSL1 isoform A 297 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1525g00001 Gabi-Chr1525 4296 7834 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1525g00001 30 971 Receptor kinase-like Gene Family AT5G25930 50.842 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi1525g00001 Pkinase 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1525g00001 - - gmx:100798963 1539.24