Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1521g00013 ATGCCTCGTAAAGGAAACTATAGACTCGATTACGACGATGATGATTATGACAACGACTATGATTATGATGTTGACATAGAGGACTATGGAGAAGGACCTGATACAAAGCAACAGACTACTAAGCCTGGGCTCTGGCAATGCTCCATTTGCACTTATGACAACGATGAGAGTATGACTTCGTGTGATATTTGTGGTGTTGTACGTCGTTCCTTGGTTAACATTGGAACTTCCAAGACTAACAAAACAGCTCCTTTCAATTTTGATGTTCCATCCCCAGATGATGTGGTTTGTACTGGCCTACATTCTTCCAAAATGGGTTTGAAAGACAAATTTACCAACTCTAAAACTTCTCGAGTTTCATCAAGCATCACAGAGAGGAATGAACTTCCTATGCAATCATATGGTGAAAGTTCTGACAACTTATCATCCATGATGCGGAAGAGCAGGCAGGATAGTTCAGCTGAAAACAAGCTTTCCAAAAATGTGGCAATTGATCTTGAAGCAAGTGATAAAGCTTCAAACAGCTTACCAGCATCTTTACCAAAGGGCAAAGATAGCAAATTGAATAATGTAAATTCTTCCAAAAATGGTACAGTTGATATTCAATCAGGAGAAGAAAAGTCAGGTAGTTTATCTGCACTGCCAAAAGTAAAAAAAAGTGATGAGATTAGTTTCGCTTCTATCAAAGTTGGAAAACCTGAAAGCCTTCCCAGCGATTTTGACAACATGGTTCTTGATGTAAGATCTGGAAATTCAGATAGTACTAATGCTAAGGGAACTTGTCCACAAGTTTCTTATAAGCCAGAAAAATGGATGCTCCCACAACAAGCTGAAGATACATTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGAAAATCAACACTATCTGGTAGGCTACTACACCTATTAGGACGAATTTCCCAGAAAGAGATGCACAAATATGAAAAGGAGGCCAAGTTACAGGGCAAGGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGTTCTGAAGAAAGGGAAAGGGGAATAACTATGACAGTGGCTGTTGCTTATTTTGACACTAAGAAATATCACGTTGTTGTGCTTGACTCCCCTGGCCATAAAGATTTTGTCCCAAACATGATTTCTGGGGCAACACAAGCTGATGCTGCAATTCTTGTTATAGACGCTTCACTTGGTTCATTTGAAACTGGTATGGATGGTAGCAAAGGACAAACAAGGGAGCATGCACAACTTATTAGAAGTTTTGGTGTTGACCAGGTTATAGTTGCAGTGAATAAGATGGATGCTGTGGCATACTCCAAAGATCGATTTGATTTTATACAACAGAAGCTGGGAATTTTTCTTCGCTCATGTGGATTCAAAGATTCTTCTATATCATGGATTCCTATGAGTGCCATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGATCCTCATTTCAAAAACTGGTATAATGGACCTTTTCTGTTAGATTCAATTGATTCACTCCAACCTCCTACTAGAGAATTCTCAAAACCTCTACTAATGCCGATATGTGATGTCATCAAATCACCTACACTTGGACAGGTGTCTGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCAGAGTGGATCAAAGGTCTTGGTTATGCCTTCAGCTGTTGTGGGGACAGTACGCTCATTGGAGCGTGACTCTAATGCCTGCAAGGTTGCAAGAGCTGGAGATAACGTAGCTGTAACATTGCTAGGTGTAGATGGAAGTCATGTAATGGCAGGAGGTGTACTATGCCATCCTGACTTTCCTGTCACAGTTGCAAAGCATTTGGAGTTGAAAGTACTTCTCTTGGATGGTGCAAGTCCCTTATTGGTGGGCTCTCAGTTAGAGTTTCATATACACCATGCAAAGGAACCTGCTAGAGTTTCAAAAATATTGTCAGTACTTGATCCCAAGACTGGTAAGGTAACCAAAAAGTCCCCACGCTGTCTCACTGCAAAGCAAAGTGCAGTAATTGAGGTGATTTTGCACGAGACAGTCTGTGTAGTAGAGTTCTCTAGTTGCAAAGCTCTTGGAAGGGTGTCCTTAAGATCATTAGGAAGAACAATTGCTGTTGGACTTGTGACAAGAATTATTGAAGATGAAAATTAG 2139 0.4067 MPRKGNYRLDYDDDDYDNDYDYDVDIEDYGEGPDTKQQTTKPGLWQCSICTYDNDESMTSCDICGVVRRSLVNIGTSKTNKTAPFNFDVPSPDDVVCTGLHSSKMGLKDKFTNSKTSRVSSSITERNELPMQSYGESSDNLSSMMRKSRQDSSAENKLSKNVAIDLEASDKASNSLPASLPKGKDSKLNNVNSSKNGTVDIQSGEEKSGSLSALPKVKKSDEISFASIKVGKPESLPSDFDNMVLDVRSGNSDSTNAKGTCPQVSYKPEKWMLPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFVPNMISGATQADAAILVIDASLGSFETGMDGSKGQTREHAQLIRSFGVDQVIVAVNKMDAVAYSKDRFDFIQQKLGIFLRSCGFKDSSISWIPMSAMENQNLVASPSDPHFKNWYNGPFLLDSIDSLQPPTREFSKPLLMPICDVIKSPTLGQVSACGKLEAGALQSGSKVLVMPSAVVGTVRSLERDSNACKVARAGDNVAVTLLGVDGSHVMAGGVLCHPDFPVTVAKHLELKVLLLDGASPLLVGSQLEFHIHHAKEPARVSKILSVLDPKTGKVTKKSPRCLTAKQSAVIEVILHETVCVVEFSSCKALGRVSLRSLGRTIAVGLVTRIIEDEN 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1521g00013 712 MobiDBLite consensus disorder prediction 172 209 - -
Gabi1521g00013 712 ProSitePatterns Zinc finger RanBP2-type signature. 45 64 IPR001876 -
Gabi1521g00013 712 MobiDBLite consensus disorder prediction 172 213 - -
Gabi1521g00013 712 Gene3D - 272 505 IPR027417 -
Gabi1521g00013 712 Pfam Elongation factor Tu GTP binding domain 284 477 IPR000795 GO:0003924|GO:0005525
Gabi1521g00013 712 Gene3D Translation factors 509 598 - -
Gabi1521g00013 712 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 281 512 IPR000795 GO:0003924|GO:0005525
Gabi1521g00013 712 FunFam elongation factor 1-alpha isoform X4 602 711 - -
Gabi1521g00013 712 SMART zf_4 43 67 IPR001876 -
Gabi1521g00013 712 ProSiteProfiles Zinc finger RanBP2 type profile. 41 70 IPR001876 -
Gabi1521g00013 712 CDD EF1_alpha 285 504 - -
Gabi1521g00013 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 526 IPR027417 -
Gabi1521g00013 712 CDD HBS1_C_III 599 707 - -
Gabi1521g00013 712 FunFam Elongation factor 1 alpha-like protein 274 505 - -
Gabi1521g00013 712 Gene3D - 36 82 - -
Gabi1521g00013 712 SUPERFAMILY Translation proteins 503 598 IPR009000 -
Gabi1521g00013 712 MobiDBLite consensus disorder prediction 108 157 - -
Gabi1521g00013 712 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 604 708 IPR009001 -
Gabi1521g00013 712 Gene3D Translation factors 602 712 - -
Gabi1521g00013 712 PANTHER TRANSLATION FACTOR 279 707 - -
Gabi1521g00013 712 PRINTS GTP-binding elongation factor signature 344 352 IPR000795 GO:0003924|GO:0005525
Gabi1521g00013 712 PRINTS GTP-binding elongation factor signature 425 434 IPR000795 GO:0003924|GO:0005525
Gabi1521g00013 712 PRINTS GTP-binding elongation factor signature 380 391 IPR000795 GO:0003924|GO:0005525
Gabi1521g00013 712 PRINTS GTP-binding elongation factor signature 285 298 IPR000795 GO:0003924|GO:0005525
Gabi1521g00013 712 PRINTS GTP-binding elongation factor signature 364 374 IPR000795 GO:0003924|GO:0005525
Gabi1521g00013 712 FunFam Translation elongation factor EF-1 508 598 - -
Gabi1521g00013 712 Pfam Elongation factor Tu C-terminal domain 602 707 IPR004160 -
Gabi1521g00013 712 SUPERFAMILY Ran binding protein zinc finger-like 42 68 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1521g00013 Gabi-Chr1521 204466 217014 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1521g00013 43 710 Eukaryotic Initiation Factors Gene Family AT5G10630 60.358 0.0 791