Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1521g00012 ATGCCTCGTAAAGGAAACTATAGACTCGATTACGACGATGATGATTATGACAACGACTATGATTATGATGTTGACATAGAGGACTATGGAGAAGGACCTGATACAAAGCAACAGACTACTAAGCCTGGGCTCTGGCAATGCTCCATTTGCACTTATGACAACGATGAGAGTATGACTTCGTGTGATATTTGTGGTGTTGTACGTCGTTCCTTGGTTAACATTGGAACTTCCAAGACTAACAAAACAGTTGAAGACACAAGCAAAACTTCTGGAGCATCCAAGTTGGCAAGGTCTCTTTTTGCATCATTGCCACAACAGATTCCCAAAGAGATTGTGTTATTTCCAAAGCGGGGTGATGGTTTTCAGATAGATGGAAGTAACTTCTACAAGCTTGAGAATGTCCAAGGAGAATTTCATGAATTTCATAAGCTTGTTAATACTCAAAGCAATCCCCATTTAAACATAGCTCCTTTCAATTTTGATGTTCCATCCCCAGATGATGTGGTTTGTACTGGCCTACATTCTTCCAAAATGGGTTTGAAAGACAAATTTACCAACTCTAAAACTTCTCGAGTTTCATCAAGCATCACAGAGAGGAATGAACTTCCTATGCAATCATATGGTGAAAGTTCTGACAACTTATCATCCATGATGCGGAAGAGCAGGCAGGATAGTTCAGCTGAAAACAAGCTTTCCAAAAATGTGGCAATTGATCTTGAAGCAAGTGATAAAGCTTCAAACAGCTTACCAGCATCTTTACCAAAGGGCAAAGATAGCAAATTGAATAATGTAAATTCTTCCAAAAATGGTACAGTTGATATTCAATCAGGAGAAGAAAAGTCAGGTAGTTTATCTGCACTGCCAAAAGTAAAAAAAAGTGATGAGATTAGTTTCGCTTCTATCAAAGTTGGAAAACCTGAAAGCCTTCCCAGCGATTTTGACAACATGGTTCTTGATGTAAGATCTGGAAATTCAGATAGTACTAATGCTAAGGGAACTTGTCCACAAGTTTCTTATAAGCCAGAAAAATGGATGCTCCCACAACAAGCTGAAGATACATTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGAAAATCAACACTATCTGGTAGGCTACTACACCTATTAGGACGAATTTCCCAGAAAGAGATGCACAAATATGAAAAGGAGGCCAAGTTACAGGGCAAGGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGTTCTGAAGAAAGGGAAAGGGGAATAACTATGACAGTGGCTGTTGCTTATTTTGACACTAAGAAATATCACGTTGTTGTGCTTGACTCCCCTGGCCATAAAGATTTTGTCCCAAACATGATTTCTGGGGCAACACAAGCTGATGCTGCAATTCTTGTTATAGACGCTTCACTTGGTTCATTTGAAACTGGTATGGATGGTAGCAAAGGACAAACAAGGGAGCATGCACAACTTATTAGAAGTTTTGGTGTTGACCAGGTTATAGTTGCAGTGAATAAGATGGATGCTGTGGCATACTCCAAAGATCGATTTGATTTTATACAACAGAAGCTGGGAATTTTTCTTCGCTCATGTGGATTCAAAGATTCTTCTATATCATGGATTCCTATGAGTGCCATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGATCCTCATTTCAAAAACTGGTATAATGGACCTTTTCTGTTAGATTCAATTGATTCACTCCAACCTCCTACTAGAGAATTCTCAAAACCTCTACTAATGCCGATATGTGATGTCATCAAATCACCTACACTTGGACAGGTGTCTGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCAGAGTGGATCAAAGGTCTTGGTTATGCCTTCAGCTGTTGTGGGGACAGTACGCTCATTGGAGCGTGACTCTAATGCCTGCAAGGTTGCAAGAGCTGGAGATAACGTAGCTGTAACATTGCTAGGTGTAGATGGAAGTCATGTAATGGCAGGAGGTGTACTATGCCATCCTGACTTTCCTGTCACAGTTGCAAAGCATTTGGAGTTGAAAGTACTTCTCTTGGATGGTGCAAGTCCCTTATTGGTGGGCTCTCAGTTAGAGTTTCATATACACCATGCAAAGGAACCTGCTAGAGTTTCAAAAATATTGTCAGTACTTGATCCCAAGACTGGTAAGGTAACCAAAAAGTCCCCACGCTGTCTCACTGCAAAGCAAAGTGCAGTAATTGAGGTGATTTTGCACGAGACAGTCTGTGTAGTAGAGTTCTCTAGTTGCAAAGCTCTTGGAAGGGTGTCCTTAAGATCATTAGGAAGAACAATTGCTGTTGGACTTGTGACAAGAATTATTGAAGATGAAAATTAG 2358 0.4046 MPRKGNYRLDYDDDDYDNDYDYDVDIEDYGEGPDTKQQTTKPGLWQCSICTYDNDESMTSCDICGVVRRSLVNIGTSKTNKTVEDTSKTSGASKLARSLFASLPQQIPKEIVLFPKRGDGFQIDGSNFYKLENVQGEFHEFHKLVNTQSNPHLNIAPFNFDVPSPDDVVCTGLHSSKMGLKDKFTNSKTSRVSSSITERNELPMQSYGESSDNLSSMMRKSRQDSSAENKLSKNVAIDLEASDKASNSLPASLPKGKDSKLNNVNSSKNGTVDIQSGEEKSGSLSALPKVKKSDEISFASIKVGKPESLPSDFDNMVLDVRSGNSDSTNAKGTCPQVSYKPEKWMLPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFVPNMISGATQADAAILVIDASLGSFETGMDGSKGQTREHAQLIRSFGVDQVIVAVNKMDAVAYSKDRFDFIQQKLGIFLRSCGFKDSSISWIPMSAMENQNLVASPSDPHFKNWYNGPFLLDSIDSLQPPTREFSKPLLMPICDVIKSPTLGQVSACGKLEAGALQSGSKVLVMPSAVVGTVRSLERDSNACKVARAGDNVAVTLLGVDGSHVMAGGVLCHPDFPVTVAKHLELKVLLLDGASPLLVGSQLEFHIHHAKEPARVSKILSVLDPKTGKVTKKSPRCLTAKQSAVIEVILHETVCVVEFSSCKALGRVSLRSLGRTIAVGLVTRIIEDEN 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1521g00012 785 CDD EF1_alpha 358 577 - -
Gabi1521g00012 785 Gene3D Translation factors 582 671 - -
Gabi1521g00012 785 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 354 585 IPR000795 GO:0003924|GO:0005525
Gabi1521g00012 785 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 677 781 IPR009001 -
Gabi1521g00012 785 Gene3D Translation factors 675 785 - -
Gabi1521g00012 785 CDD HBS1_C_III 672 780 - -
Gabi1521g00012 785 FunFam elongation factor 1-alpha isoform X4 675 784 - -
Gabi1521g00012 785 ProSitePatterns Zinc finger RanBP2-type signature. 45 64 IPR001876 -
Gabi1521g00012 785 MobiDBLite consensus disorder prediction 245 286 - -
Gabi1521g00012 785 FunFam Translation elongation factor EF-1 581 671 - -
Gabi1521g00012 785 Gene3D - 345 578 IPR027417 -
Gabi1521g00012 785 PRINTS GTP-binding elongation factor signature 498 507 IPR000795 GO:0003924|GO:0005525
Gabi1521g00012 785 PRINTS GTP-binding elongation factor signature 453 464 IPR000795 GO:0003924|GO:0005525
Gabi1521g00012 785 PRINTS GTP-binding elongation factor signature 437 447 IPR000795 GO:0003924|GO:0005525
Gabi1521g00012 785 PRINTS GTP-binding elongation factor signature 417 425 IPR000795 GO:0003924|GO:0005525
Gabi1521g00012 785 PRINTS GTP-binding elongation factor signature 358 371 IPR000795 GO:0003924|GO:0005525
Gabi1521g00012 785 SMART zf_4 43 67 IPR001876 -
Gabi1521g00012 785 ProSiteProfiles Zinc finger RanBP2 type profile. 41 70 IPR001876 -
Gabi1521g00012 785 MobiDBLite consensus disorder prediction 185 230 - -
Gabi1521g00012 785 SUPERFAMILY Ran binding protein zinc finger-like 42 68 IPR036443 -
Gabi1521g00012 785 Gene3D - 36 85 - -
Gabi1521g00012 785 SUPERFAMILY Translation proteins 576 671 IPR009000 -
Gabi1521g00012 785 PANTHER TRANSLATION FACTOR 352 780 - -
Gabi1521g00012 785 Pfam Elongation factor Tu C-terminal domain 676 780 IPR004160 -
Gabi1521g00012 785 Pfam Elongation factor Tu GTP binding domain 357 550 IPR000795 GO:0003924|GO:0005525
Gabi1521g00012 785 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 599 IPR027417 -
Gabi1521g00012 785 Coils Coil 782 785 - -
Gabi1521g00012 785 MobiDBLite consensus disorder prediction 245 282 - -
Gabi1521g00012 785 FunFam Elongation factor 1 alpha-like protein 347 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1521g00012 Gabi-Chr1521 204466 217014 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1521g00012 43 81 Eukaryotic Initiation Factors Gene Family AT5G10630 56.410 8.88e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1521g00012 K14416 - gmx:100801724 1282.32