LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1521g00011	ATGGGAATTCAGGGTCTTTTGCCGCAATTGAAATCGATCATGGTTCCAACCCACATCAAAGACTTGAAGGGTTGTTCCGTAGCCGTAGACACCTATTCTTGGCTCCACAAAGGTGCATTATCTTGCAGCACTGACCTCTGCAAAGGGATACCCACTTCTAGGCACATTGAGTATTGCATGCATAGAGTAAATTTGCTGCGCCACTTTGGTGTTAAGCCTATTCTAGTCTTCGATGGAGGTCTTCTACCAATGAAGAGTGAACAAGAGAACAAGCGTGCCAGGGTAAGAAAGGATAATTTTGCACGTGCAGTTGAACACGAGTCAGATGGAAATTCTGCTGCTGCCTACGAGTGCTACCAGAAAGCTGTTGATATTTCACCTCTGGTTGCACTTGAACTAATTCAGGTCTTGAAGCAGGAGAATGTGCATTATGTTGTTGCTCCTTATGAGGCAGATGCCCAGATGACATTCTTGGCAGTTAGTGGACAGGTTGATGCAGTTATAACTGAAGACTCTGATCTTATACCTTTTGGTTGCCCAAGAATTATCTTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTTCAGTATTCCATGCTACAAAAGAATAAGGAGCTTAGTTTTGAAGGGTTCAACCGACAAATGCTTCTTGAAATGTGTATTTTGAGTGGTTGTGACTATCTTCAGTCATTGCCAGGTATGGGCCTCAAAAGGGCCCATGCAAGCATTAAAAGATTCAAAAGTTATGACAAGTTCTATATGAAATTTGTTGTAATCCTAATGTCAATTGCAATGTATCAGGTTCTTAAGCACTTGAGATACAGTGGTGTTTCTGTGCCTCCCTTTTATGAAGAGTCATTCAAGAAGGCTATACTTACTTTCCAATATCAAAGGGTTTATGATCCAATTAATGAAAATATTGTCCATTTGTCTCATATACCTGATGATATCGGTGGCGAGCTAGACTTTTTAGATCTTACTAGAAATCATACCTTAACCTGGGATACACCTATGCCAAAAAATATTGCACAAGGAATAGCAAAAGGGGATCTTGATCCATTTACCAAAATGCCATTTGAGGGTGAGAATCTTACAGCCAGTTTAGCAATTGCAGAAACTTTTCAAATCAAAACTCTTCATTCCGAAAGTGTGAAGAAAAAGATTGATCTGCCTCTGCAGAAGAACCTCTTGACCAATAATTTTTCCTTAGCCCTGGAAGGTATTGCATCTCTTGAAGCAAAAAAGGAATTCAGAGCACCTCGGATGTCACCTACTACTGCTAATCAAAGTACATTGGATTCCTCTTCTGTCAGTCCCCTGGAACATGAGACTTTAGAAGCTGCTGCTAGTGAAACAAAGAACTCTGCTGCATCCGTAGTTGACTTTGAGAATTGTGGCAGTGGCCCTCCTCCTAATAGCTGTATTGAAAACAGTTTTGCCACCAAAAATTCGGAGTTTATGGAATCTCCATTATCTATGGTGGGTGAGAAGAATAAAGGTCCTGAACATACAATACTGCAACAGCCCAGGCAGCCAATTCATAAACCTTGTCTGGGGTTGCATAAGGAGCATGAGCAAACAAATGTTCAAGACACAGTTGAAGGAAAAACCAGGGAGGCAACAAGAAAGGTAATTGTCAGGAGCGCTTATTTTCAACACAAGCAAGCAGAAAAGAATGTTTGCGACAAGAACCGAGATCACTTGTCCTCTGGCATTTTCATTGATGAGAGAAAAAATGCCGTATCTGACAGTGATTTATGTAACAACCAGTTGAAGAATAAAAATTTGAAAAGGAAGATTTCCCCTAATGACAATATTCAAAATGAAAATTTGCAGCCCAAGCAAATGCATCCTGCTTCACCTCCTCATAAAAATGGTTACTGTGATCACAGTGATGATAGACCATTTACAGAGAATAATGCTGAAGAAAAATTTGGGACAAAAATTTCCCATCTAGGCCATTATTCAGAAATAGCTGAGAAGTCTATGGAAAGATTTGTCTCTGTGATATCATCCTTTAGATGCTCTTCTGGTTCTCGTGCAAGTGGCCTCCGTGCTCCTCTGAAAGATGTTCGAAACACTTGTAATAATAGGCCAACAACCGCTGAAGACTTCAGACAATATGCATACGTGCCAACAAAACAAAGAAAGACTAGCAGAATAGCTCCTGGGAATAAATTCAAGTTGTTTAAGTGGAACCTTACTTGA	2208	0.4026	MGIQGLLPQLKSIMVPTHIKDLKGCSVAVDTYSWLHKGALSCSTDLCKGIPTSRHIEYCMHRVNLLRHFGVKPILVFDGGLLPMKSEQENKRARVRKDNFARAVEHESDGNSAAAYECYQKAVDISPLVALELIQVLKQENVHYVVAPYEADAQMTFLAVSGQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQFQYSMLQKNKELSFEGFNRQMLLEMCILSGCDYLQSLPGMGLKRAHASIKRFKSYDKFYMKFVVILMSIAMYQVLKHLRYSGVSVPPFYEESFKKAILTFQYQRVYDPINENIVHLSHIPDDIGGELDFLDLTRNHTLTWDTPMPKNIAQGIAKGDLDPFTKMPFEGENLTASLAIAETFQIKTLHSESVKKKIDLPLQKNLLTNNFSLALEGIASLEAKKEFRAPRMSPTTANQSTLDSSSVSPLEHETLEAAASETKNSAASVVDFENCGSGPPPNSCIENSFATKNSEFMESPLSMVGEKNKGPEHTILQQPRQPIHKPCLGLHKEHEQTNVQDTVEGKTREATRKVIVRSAYFQHKQAEKNVCDKNRDHLSSGIFIDERKNAVSDSDLCNNQLKNKNLKRKISPNDNIQNENLQPKQMHPASPPHKNGYCDHSDDRPFTENNAEEKFGTKISHLGHYSEIAEKSMERFVSVISSFRCSSGSRASGLRAPLKDVRNTCNNRPTTAEDFRQYAYVPTKQRKTSRIAPGNKFKLFKWNLT	735

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1521g00011	735	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	137	154	IPR006084	-
	Gabi1521g00011	735	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	24	38	IPR006084	-
	Gabi1521g00011	735	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	216	231	IPR006084	-
	Gabi1521g00011	735	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	158	178	IPR006084	-
	Gabi1521g00011	735	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	73	92	IPR006084	-
	Gabi1521g00011	735	Pfam	XPG N-terminal domain	1	98	IPR006085	GO:0004518
	Gabi1521g00011	735	ProSitePatterns	XPG protein signature 1.	71	85	IPR019974	GO:0016788
	Gabi1521g00011	735	ProSiteProfiles	CRAL-TRIO lipid binding domain profile.	134	325	IPR001251	-
	Gabi1521g00011	735	CDD	PIN_EXO1	1	202	IPR044752	GO:0046872
	Gabi1521g00011	735	FunFam	Exonuclease 1, putative	1	207	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1521g00011	Gabi-Chr1521	192317	199130	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1521g00011	1	244	Core DNA Replication Machinery Family	AT5G26680	27.652	7.82e-17	81.6

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1521g00011	K10746		-	gmx:100798062	1030.39

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