Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1521g00011 ATGGGAATTCAGGGTCTTTTGCCGCAATTGAAATCGATCATGGTTCCAACCCACATCAAAGACTTGAAGGGTTGTTCCGTAGCCGTAGACACCTATTCTTGGCTCCACAAAGGTGCATTATCTTGCAGCACTGACCTCTGCAAAGGGATACCCACTTCTAGGCACATTGAGTATTGCATGCATAGAGTAAATTTGCTGCGCCACTTTGGTGTTAAGCCTATTCTAGTCTTCGATGGAGGTCTTCTACCAATGAAGAGTGAACAAGAGAACAAGCGTGCCAGGGTAAGAAAGGATAATTTTGCACGTGCAGTTGAACACGAGTCAGATGGAAATTCTGCTGCTGCCTACGAGTGCTACCAGAAAGCTGTTGATATTTCACCTCTGGTTGCACTTGAACTAATTCAGGTCTTGAAGCAGGAGAATGTGCATTATGTTGTTGCTCCTTATGAGGCAGATGCCCAGATGACATTCTTGGCAGTTAGTGGACAGGTTGATGCAGTTATAACTGAAGACTCTGATCTTATACCTTTTGGTTGCCCAAGAATTATCTTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTTCAGTATTCCATGCTACAAAAGAATAAGGAGCTTAGTTTTGAAGGGTTCAACCGACAAATGCTTCTTGAAATGTGTATTTTGAGTGGTTGTGACTATCTTCAGTCATTGCCAGGTATGGGCCTCAAAAGGGCCCATGCAAGCATTAAAAGATTCAAAAGTTATGACAAGTTCTATATGAAATTTGTTGTAATCCTAATGTCAATTGCAATGTATCAGGTTCTTAAGCACTTGAGATACAGTGGTGTTTCTGTGCCTCCCTTTTATGAAGAGTCATTCAAGAAGGCTATACTTACTTTCCAATATCAAAGGGTTTATGATCCAATTAATGAAAATATTGTCCATTTGTCTCATATACCTGATGATATCGGTGGCGAGCTAGACTTTTTAGATCTTACTAGAAATCATACCTTAACCTGGGATACACCTATGCCAAAAAATATTGCACAAGGAATAGCAAAAGGGGATCTTGATCCATTTACCAAAATGCCATTTGAGGGTGAGAATCTTACAGCCAGTTTAGCAATTGCAGAAACTTTTCAAATCAAAACTCTTCATTCCGAAAGTGTGAAGAAAAAGATTGATCTGCCTCTGCAGAAGAACCTCTTGACCAATAATTTTTCCTTAGCCCTGGAAGGTATTGCATCTCTTGAAGCAAAAAAGGAATTCAGAGCACCTCGGATGTCACCTACTACTGCTAATCAAAGTACATTGGATTCCTCTTCTGTCAGTCCCCTGGAACATGAGACTTTAGAAGCTGCTGCTAGTGAAACAAAGAACTCTGCTGCATCCGTAGTTGACTTTGAGAATTGTGGCAGTGGCCCTCCTCCTAATAGCTGTATTGAAAACAGTTTTGCCACCAAAAATTCGGAGTTTATGGAATCTCCATTATCTATGGTGGGTGAGAAGAATAAAGGTCCTGAACATACAATACTGCAACAGCCCAGGCAGCCAATTCATAAACCTTGTCTGGGGTTGCATAAGGAGCATGAGCAAACAAATGTTCAAGACACAGTTGAAGGAAAAACCAGGGAGGCAACAAGAAAGGTAATTGTCAGGAGCGCTTATTTTCAACACAAGCAAGCAGAAAAGAATGTTTGCGACAAGAACCGAGATCACTTGTCCTCTGGCATTTTCATTGATGAGAGAAAAAATGCCGTATCTGACAGTGATTTATGTAACAACCAGTTGAAGAATAAAAATTTGAAAAGGAAGATTTCCCCTAATGACAATATTCAAAATGAAAATTTGCAGCCCAAGCAAATGCATCCTGCTTCACCTCCTCATAAAAATGGTTACTGTGATCACAGTGATGATAGACCATTTACAGAGAATAATGCTGAAGAAAAATTTGGGACAAAAATTTCCCATCTAGGCCATTATTCAGAAATAGCTGAGAAGTCTATGGAAAGATTTGTCTCTGTGATATCATCCTTTAGATGCTCTTCTGGTTCTCGTGCAAGTGGCCTCCGTGCTCCTCTGAAAGATGTTCGAAACACTTGTAATAATAGGCCAACAACCGCTGAAGACTTCAGACAATATGCATACGTGCCAACAAAACAAAGAAAGACTAGCAGAATAGCTCCTGGGAATAAATTCAAGTTGTTTAAGTGGAACCTTACTTGA 2208 0.4026 MGIQGLLPQLKSIMVPTHIKDLKGCSVAVDTYSWLHKGALSCSTDLCKGIPTSRHIEYCMHRVNLLRHFGVKPILVFDGGLLPMKSEQENKRARVRKDNFARAVEHESDGNSAAAYECYQKAVDISPLVALELIQVLKQENVHYVVAPYEADAQMTFLAVSGQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQFQYSMLQKNKELSFEGFNRQMLLEMCILSGCDYLQSLPGMGLKRAHASIKRFKSYDKFYMKFVVILMSIAMYQVLKHLRYSGVSVPPFYEESFKKAILTFQYQRVYDPINENIVHLSHIPDDIGGELDFLDLTRNHTLTWDTPMPKNIAQGIAKGDLDPFTKMPFEGENLTASLAIAETFQIKTLHSESVKKKIDLPLQKNLLTNNFSLALEGIASLEAKKEFRAPRMSPTTANQSTLDSSSVSPLEHETLEAAASETKNSAASVVDFENCGSGPPPNSCIENSFATKNSEFMESPLSMVGEKNKGPEHTILQQPRQPIHKPCLGLHKEHEQTNVQDTVEGKTREATRKVIVRSAYFQHKQAEKNVCDKNRDHLSSGIFIDERKNAVSDSDLCNNQLKNKNLKRKISPNDNIQNENLQPKQMHPASPPHKNGYCDHSDDRPFTENNAEEKFGTKISHLGHYSEIAEKSMERFVSVISSFRCSSGSRASGLRAPLKDVRNTCNNRPTTAEDFRQYAYVPTKQRKTSRIAPGNKFKLFKWNLT 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1521g00011 735 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Gabi1521g00011 735 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Gabi1521g00011 735 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Gabi1521g00011 735 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Gabi1521g00011 735 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Gabi1521g00011 735 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Gabi1521g00011 735 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Gabi1521g00011 735 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 134 325 IPR001251 -
Gabi1521g00011 735 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Gabi1521g00011 735 FunFam Exonuclease 1, putative 1 207 - -
Gabi1521g00011 735 Gene3D - 1 207 - -
Gabi1521g00011 735 SMART xpgineu 138 208 IPR006086 GO:0004518
Gabi1521g00011 735 MobiDBLite consensus disorder prediction 599 615 - -
Gabi1521g00011 735 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Gabi1521g00011 735 SMART xpgn3 1 99 IPR006085 GO:0004518
Gabi1521g00011 735 CDD H3TH_EXO1 214 301 IPR037315 GO:0003677|GO:0035312
Gabi1521g00011 735 MobiDBLite consensus disorder prediction 599 638 - -
Gabi1521g00011 735 Gene3D - 209 297 - -
Gabi1521g00011 735 MobiDBLite consensus disorder prediction 419 439 - -
Gabi1521g00011 735 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Gabi1521g00011 735 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 358 IPR036279 -
Gabi1521g00011 735 MobiDBLite consensus disorder prediction 422 439 - -
Gabi1521g00011 735 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Gabi1521g00011 735 FunFam exonuclease 1 209 297 - -
Gabi1521g00011 735 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 452 IPR006084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1521g00011 Gabi-Chr1521 192317 199130 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1521g00011 1 244 Core DNA Replication Machinery Family AT5G26680 27.652 7.82e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1521g00011 K10746 - gmx:100798062 1030.39