Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1520g00004 ATGGCTCTTACAGTTCAACATGCATTCTCTCATCTACTCACTATTGTAGCTTTACTCTCAATATTCCTAGTGATACCTTCCTCTTGTTTCAACCCAAAAAAGCTTGATACTGCTTCATACTCTGCATCTGGTTCAAATTGGTCACCTGCACTGGCCACTTGGTATGGACCTGCCCAAGGCGATGGAAGTGAAGGTGGTGCTTGTGGATATGGCACTGCTGTTGGACAATCTCCATTCTCAGCAATGGTATCTGCGGGAAGCCCTCTCTTATATGACTCAGGCAAAGGCTGTGGTTCTTGTTATGAGGTGATGTGCACGGGGAATTCTGCATGTTCTGGCAAACCTGTGAGGGTAGTTATCACTGATGAGTGTGATGGGTGTGGCTCAGATGCTGAATATCATTTTGATTTGAGTGGCAGTGCTTTTGGTGCAATGGCAGTTTCAGGTCAAGATCAGAAGCTACGCGATGCTGGAAAAATAGACATTCAATTTAGAAGAGTTGAATGCAACTATCCTGGTACGTCAATAGCTTTCCATGTGGACTCTGGATCCAACCAAGAATATTTTGCTACATTGGTAGAATATGAGGATGGGGATGGTGATCTTGCCAAAGTTGAACTCAAGGAAGCACTAGACTCAGCCTCATGGGATTCCATGCAGCAATCATGGGGTGCTGTTTGGAAATTTGACAAAGGCTCACCGTTGAAAGCACCGTTCTCTATTAGGCTAACCACACTTGAGTCTGGCAAGGCTATTTTGGCCAACAATGTGATCCCTGCAGGGTGGACGCCTGGTCAAACTTATAGATCAATTGTGAATTTCGAAACCTAA 831 0.4489 MALTVQHAFSHLLTIVALLSIFLVIPSSCFNPKKLDTASYSASGSNWSPALATWYGPAQGDGSEGGACGYGTAVGQSPFSAMVSAGSPLLYDSGKGCGSCYEVMCTGNSACSGKPVRVVITDECDGCGSDAEYHFDLSGSAFGAMAVSGQDQKLRDAGKIDIQFRRVECNYPGTSIAFHVDSGSNQEYFATLVEYEDGDGDLAKVELKEALDSASWDSMQQSWGAVWKFDKGSPLKAPFSIRLTTLESGKAILANNVIPAGWTPGQTYRSIVNFET 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1520g00004 276 CDD DPBB_EXPB_N 47 169 - -
Gabi1520g00004 276 Gene3D - 171 275 IPR036749 -
Gabi1520g00004 276 SUPERFAMILY PHL pollen allergen 175 270 IPR036749 -
Gabi1520g00004 276 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 187 270 IPR007117 -
Gabi1520g00004 276 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 174 IPR007112 -
Gabi1520g00004 276 PRINTS Major pollen allergen Lol pI signature 225 242 IPR005795 GO:0005576|GO:0019953
Gabi1520g00004 276 PRINTS Major pollen allergen Lol pI signature 85 96 IPR005795 GO:0005576|GO:0019953
Gabi1520g00004 276 PRINTS Major pollen allergen Lol pI signature 105 115 IPR005795 GO:0005576|GO:0019953
Gabi1520g00004 276 PRINTS Major pollen allergen Lol pI signature 194 209 IPR005795 GO:0005576|GO:0019953
Gabi1520g00004 276 PRINTS Major pollen allergen Lol pI signature 146 161 IPR005795 GO:0005576|GO:0019953
Gabi1520g00004 276 PRINTS Major pollen allergen Lol pI signature 178 193 IPR005795 GO:0005576|GO:0019953
Gabi1520g00004 276 Pfam Expansin C-terminal domain 176 259 IPR007117 -
Gabi1520g00004 276 Pfam Lytic transglycolase 84 163 IPR009009 -
Gabi1520g00004 276 Gene3D - 33 170 IPR036908 -
Gabi1520g00004 276 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Gabi1520g00004 276 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576
Gabi1520g00004 276 PRINTS Expansin/Lol pI family signature 216 230 IPR007118 GO:0005576
Gabi1520g00004 276 PRINTS Expansin/Lol pI family signature 256 270 IPR007118 GO:0005576
Gabi1520g00004 276 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Gabi1520g00004 276 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576
Gabi1520g00004 276 PANTHER EXPANSIN-B3 20 274 - -
Gabi1520g00004 276 SMART dpbb_1 83 164 IPR007112 -
Gabi1520g00004 276 SUPERFAMILY Barwin-like endoglucanases 39 173 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1520g00004 Gabi-Chr1520 148111 150098 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1520g00004 1 274 Expansin Gene Family AT1G65680 56.204 2.19e-111 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1520g00004 - - gmx:548090 494.967