Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1520g00001 ATGTTGGATACGGTGTGGCCATTTGCACGTGATTATGTGTTTCCACTAATAATGGGAGCAGTGAACATGATCAGGGGCGTCCGAAACGAAATTGATGACATTCAAAATGAACTAGGACGCTTTGAAGCCTTCATCAATGAGCAAGACAGAAAGGCTGAAGCTGAAGATGACGAAACACGTGACAGAATCATAAACAGGGTGAAGTTGGTGAGAGAAGCAGTTTTTCGCATGGAAGATGTCATTGATGAATATGTTTCCGGCGAGGAACAACAACACCAGCCTTCGGATCCTGGCTGTGTAGTTTTACCATGTGAGCCTGTTGATCACTTCATCAAAACTATGATCCCTCGTCTTCAAATAGCATCTAAGATTAACGGTGTTAAATCACAAGTTCATGAAATCAAGGAAAGATATGAAAGAGATGGCTTCCCAATTCAATCTTCTTTGGAACAACCACCAGAAAGTTCTAGAGGAAACCAAGACCTCGCATCGCATTACCTAAAAGAGCTTCCTTTATACATTGAGGAAGCTGATGTTGTGGGCTTTGAAGCCCCTAAAGCTGCTTTGATTGGTTTGTTGGTAAAGGGAAGAGCAAAGCGCACTATCGTCTCTTTGGTAGGAATGGGAGGGCAAGGCAAAACCACTCTTGCCAAAAAAGTTTTTGACAACAAAGAGGTGATTGGGCACTTCAATTGCCATGCATGGGTGACAGTATCTCAGTCCTACACTGGGGATGGATTGTTGAGGGACATGTTGCAACAATTTTGCAATGAAAAGGAGGAGAACAAACCTGCCAATATTTCTACAATGAATCGAGCTTCATTGATAAAGGAAGTAAGGAGGTACTTGCGGCAAAATAGGTATGTTATCTTCTTTGATGACGTATGGAATGAACATTTCTGGGATCAGATTCAATTTGCTTTAATTGATGATAAAAATGGAAGCAGGATATTTATCACAACTAGAGACATGCGTGTTGCAAGTTGTTGTAAAAAAACTTCTTTTGTTGAATTGCATGAGCTACAGCCATTAACTCCTGAGAAATCTTTGGAGTTATTCTGTAGGAAGGCATTCGGATCTGATCCCAACGAATGTTGCCCACAAGATCTTATGGGTATATCTTCTGAAATTGTTAAAAAATGTGAGGGTTTACCTCTAGCAATTGTGGCCATTGGTGGTCTTTTATCTACCAAAGATAAATATCCATTAGAATGGGAACTTTTTAGCCAAGATCTAAGTTTAGAGTTGAAGAAGAATTCCCATATAGATGCTGTAACAAAGATTTTAGCTCTCAGCTATTATGATTTGCCTTACTATCTCAAGCATTGCTTCTTGTATTTCGGAATATATCCGGAAGACTATGAAGTTAAAGTAAAAAGATTGTTTCGGCAATGGGTAGCGGAGGGATTTGTCAAAAAGGAAGGGGAAAAAACTTTGGAAGACATTGCAAAAAAATATTTAACAGAGTTGGTTAATAGAAGTTTAGTGCAAGTCTCTTCGTTTACCATTGATGGTAAAATTAGAAGTTGTCGCGTTCATGACCTATTGCGCGACATGATCCATAGAAAATCTAATGATTTAAGTTTTTGCCACTTTATTGGTAAAGATGGTGAGCTAGACTCAAGTGGAATAATTAGGCGCCTATCAATATCAAGGGGTGCTTTTAGTTCAATGAGCAGTACTGAAAACATGAGAAGTATTGAAAGCTCAGACATTCGATCACTATTTGTTTTTGAAGGTGAAGATTTACCTGATGAATTTGTAAGGAGAATCCTTACAAAACACAACCCATTGAAGTTACTTGATTTTCAAGATGAACGTCGTTATTTTGAGAAACTACAAATTGAGGAATCACTTCTTGAATTTAGAAACAAGCAACTTGATTGTTTTATTGAGAGCTTGGGGGATTTTATTCACTTGAAGTATTTAAGCTTAAAGAGTGCAATTAAACTGACTAATCTTCCAAAATCAATTGGTAAGCTTCAGAACCTGGAGACCTTGGATATAAGGGGTACATATCTCCATGAATTGCCGAGGGAGATTAGCAAGCTTAAAAAGTTACGACATCTTCTTCTGAGTGATAAGACGTCTTTAATTCAATTGGAGGATTGTATTGGACTCATGACATCCCTACAAACGTTGAAAGAAGTGAATGCTGATGGAGTTGGAGTGAATCTATTTAGAGAGCTGGGAAAGCTAAGGCAGGTAAGGGAGTTGCGCATCACTGGTGTTAGGGAAGGTGTTAGGGAAGAACACAAAAGTGCCCTATATTACTCAATAAATGAGATGCGAGACTTGGAAAAACTATATATTATGATAGGTTATGGCATTGATTTTCCATTCCCACCTCGTAAACTTCAAAAGCTTGTTAAATTGTCCTTAACATCCTCCAGTCTAACTGATGATTTAATGAAATCACTACAACATATGCCAAATTTGTACTTCCTCAGTCTCAGGTGCTCTGGATATAAAGGTGAAAGTTTGCATTTTCAAGAAGGGGAGTTTCAGAAACTCAAGGAACTATACCTCGAAGGTTTATTGAACTTGAATTCCATCTTTATCGACGAAGGAGCATTGCCTTCGCTGGAGAAGTTCCGGTTATATAGAACTCGTGACCTCAAGACGGTGCCCTCTGGCATCCAATACTTAAAGAAACTTGAAGTTCTCAATATGGTTAACATGTCAACAGAATTTTATCAGAGCATTGAAGCTGATGGAGGAGAAGAGCATCCGATTCTCAAGCATGTGCCCCTTGTCAGAATTACTGCCTACCATCAACAACGCGTAGAGAAAACCCTCATTATTCAGCACTCAAGGAGTTGA 2823 0.3889 MLDTVWPFARDYVFPLIMGAVNMIRGVRNEIDDIQNELGRFEAFINEQDRKAEAEDDETRDRIINRVKLVREAVFRMEDVIDEYVSGEEQQHQPSDPGCVVLPCEPVDHFIKTMIPRLQIASKINGVKSQVHEIKERYERDGFPIQSSLEQPPESSRGNQDLASHYLKELPLYIEEADVVGFEAPKAALIGLLVKGRAKRTIVSLVGMGGQGKTTLAKKVFDNKEVIGHFNCHAWVTVSQSYTGDGLLRDMLQQFCNEKEENKPANISTMNRASLIKEVRRYLRQNRYVIFFDDVWNEHFWDQIQFALIDDKNGSRIFITTRDMRVASCCKKTSFVELHELQPLTPEKSLELFCRKAFGSDPNECCPQDLMGISSEIVKKCEGLPLAIVAIGGLLSTKDKYPLEWELFSQDLSLELKKNSHIDAVTKILALSYYDLPYYLKHCFLYFGIYPEDYEVKVKRLFRQWVAEGFVKKEGEKTLEDIAKKYLTELVNRSLVQVSSFTIDGKIRSCRVHDLLRDMIHRKSNDLSFCHFIGKDGELDSSGIIRRLSISRGAFSSMSSTENMRSIESSDIRSLFVFEGEDLPDEFVRRILTKHNPLKLLDFQDERRYFEKLQIEESLLEFRNKQLDCFIESLGDFIHLKYLSLKSAIKLTNLPKSIGKLQNLETLDIRGTYLHELPREISKLKKLRHLLLSDKTSLIQLEDCIGLMTSLQTLKEVNADGVGVNLFRELGKLRQVRELRITGVREGVREEHKSALYYSINEMRDLEKLYIMIGYGIDFPFPPRKLQKLVKLSLTSSSLTDDLMKSLQHMPNLYFLSLRCSGYKGESLHFQEGEFQKLKELYLEGLLNLNSIFIDEGALPSLEKFRLYRTRDLKTVPSGIQYLKKLEVLNMVNMSTEFYQSIEADGGEEHPILKHVPLVRITAYHQQRVEKTLIIQHSRS 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1520g00001 940 Pfam NB-ARC domain 185 433 IPR002182 GO:0043531
Gabi1520g00001 940 PRINTS Disease resistance protein signature 202 217 - -
Gabi1520g00001 940 PRINTS Disease resistance protein signature 381 395 - -
Gabi1520g00001 940 PRINTS Disease resistance protein signature 682 698 - -
Gabi1520g00001 940 PRINTS Disease resistance protein signature 282 296 - -
Gabi1520g00001 940 FunFam Probable disease resistance protein At1g61300 165 334 - -
Gabi1520g00001 940 Gene3D Ribonuclease Inhibitor 586 905 IPR032675 -
Gabi1520g00001 940 Gene3D - 11 121 - -
Gabi1520g00001 940 SUPERFAMILY L domain-like 511 894 - -
Gabi1520g00001 940 Gene3D - 167 337 IPR027417 -
Gabi1520g00001 940 FunFam Probable disease resistance protein At1g63360 433 522 - -
Gabi1520g00001 940 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 447 IPR027417 -
Gabi1520g00001 940 Gene3D - 433 524 IPR036388 -
Gabi1520g00001 940 Gene3D - 344 432 IPR042197 -
Gabi1520g00001 940 Pfam Rx N-terminal domain 15 93 IPR041118 -
Gabi1520g00001 940 PANTHER DISEASE RESISTANCE PROTEIN RP 62 862 IPR044974 GO:0006952
Gabi1520g00001 940 CDD RX-CC_like 21 136 IPR038005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1520g00001 Gabi-Chr1520 13113 15935 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1520g00001 203 932 WRKY Transcription Factor Family AT5G45050 25.389 2.39e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1520g00001 K13457 - gmx:100819372 812.757