Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi151g00020 ATGCATGGTCAAAGGAGGACTATTGGGTCCTTCCCAGCAATTGATAGTATGAAGCAAGGGCCTGGTTCTAGTAGCACTGATATGAATCGTCAGTCTTCCTTGAATCATGTGCAAAATGCAGTAGATTTCCGTTTGTCAGATTATAGAGGGTCTTCTGGTGAGACTGCATGTTTACGTGGTACTGGTCCTAATGCTCAGAGCTTCAGTGGCTGGAATTCTGGTGAACCTAGTTCAAGACTGAATCTGATCAACCAAATCAATGATGAAGGTCTGAAACCAGAACATGGGCTTTCTTCTTCATGTAGTGCTACTGCTGAGGATGGTCCAAGACCTGAGGAAAGGCAATTTGAACCGAATAATGGAATTTTTCCTGTTAGTTCAAATACTAATTTACATGGGAATCACTCTAGAATTCACCCTTCCCTTTTGCACGGTTCCAGCCCTAATCATATAACCCAGAATATTAGTCTGGATATGGGGCACATTGCTAGCACTGCTGATCGTGGGAAGGGCAAAGAAGCTGGTAGTGGTGTTAATAACAATTCTAATGGATTAGATATAGAGAAGACATCATTTGGCAATGCTTCATATAATCATTTAGGAACTCCATCTGAAAGTTCTGGATACATGGCTTTGGGAGATAGTGCCAGTTCAAGTTCTTCTTTAGTTAATTGGGGTCCTTCCTGCAAGAGAAAAGCCCTTGAAGGTAGTTCGAGGCAACTGTGTACTGGAGGAAGCTCAATCTCTCTTGTACAATCTGAAAATGGTTGCTGGCCTACTGCTCCTGTTGATCTTAATGCTTCTAGCAGTTTAAGTGATTCAACACCTCTTGAGGATATTCCTGTTAATAGTCCTCCATTACAGCAGAATACAAGAAATGAAGTGAGACAAGAAGCTTCGAATGCATTTCCTTTGATAAGTGTTGCGGAAAATGTGGAAAGACCTCAGAGACATTTTGAAAGGAGAATAATCCAACTACAGCATCAGGAACTTGTACCTCTCAATTTACCATCAACAGGGAGTGCTAGGCATCATAATCATTCTTCTCTGCATCAAATACCTGGCTCTCACTCATTTAATGATGCTTTGGAATTGAGGTTAACAGCTGGAGTAACAGCTGCTAACTCTGGTGCTCCTCAGAACCAGTCACCTGCCCTACACATGCATCCTTTTCCTTGGAATAGAGCTGCTAATCCTAGAGGGGCCAGATCTTCAATTACCATGGAAGAATTTAATTTAGGAATCTTTCCGAGAGATAGTACTGAGCACCCCATGAATGTGCCTGCATCTTCAGGTCATGAACTTACAGGTTGGCATACATCCTCTGGTGATGTGAGCAATTCTGGAGGTGTACCTACTACATCCTGGATTGGATCCAGTTCAAATGTCCACTCATTACCTAATCCCAGCTGGAGTTTTAACCATGAAGTCCCAACAGAACATCTTCAGAGAGTGTCAGAGTTCAGTCCTTGGTCCCTTTTCCCTTCATTAAGCTCAGCATCTGGTGTTCATAATGGCCATTCTACCCAATCTCCTTCTGGTCCTCCTTCATTTACTCAGGGTTCTAGCAACAATCAATCATATCTAAGAATGTTGATGGAAAGAAGAGGTAGTGATGTTTTCTCTTCTCCTCATTCACTGCGAGCATTAGCTGTTGACAATGAGGGGAGACGCCGACTAATATCTGAGATTCGCCAAGTCTTGACTGCAATGCGGAGGGGTGAGAACTTACGAGCTGAGGATTATATGGTCTTTGACCCTTTCCTATATCATGGCATGGCTGAAATGCATGACAGGCATAGAGAAATGCGCCTTGATGTTGACAACATGTCTTATGAGGAATTGTTGGCATTGGAGGAACGTATAGGAGACGTGAGCACTGGATTGAGTGAGGATATCATTAATAAGTTGTTGAAACAGCAAATTTATGTGTCTGTCATGGCAGAGTCTACTACAAATCTGGAACCTTGCTGTATCTGTCAGGAGGAATATGCTGATGGAGAGAATGTTGGTTCACTAGATTGTGGGCATGAGTTCCACAGTAACTGCATCAAGCAGTGGCTAATACAGAAGAACATGTGCCCCATTTGCAAAACAACGGCCTTAGCTACATGA 2115 0.4284 MHGQRRTIGSFPAIDSMKQGPGSSSTDMNRQSSLNHVQNAVDFRLSDYRGSSGETACLRGTGPNAQSFSGWNSGEPSSRLNLINQINDEGLKPEHGLSSSCSATAEDGPRPEERQFEPNNGIFPVSSNTNLHGNHSRIHPSLLHGSSPNHITQNISLDMGHIASTADRGKGKEAGSGVNNNSNGLDIEKTSFGNASYNHLGTPSESSGYMALGDSASSSSSLVNWGPSCKRKALEGSSRQLCTGGSSISLVQSENGCWPTAPVDLNASSSLSDSTPLEDIPVNSPPLQQNTRNEVRQEASNAFPLISVAENVERPQRHFERRIIQLQHQELVPLNLPSTGSARHHNHSSLHQIPGSHSFNDALELRLTAGVTAANSGAPQNQSPALHMHPFPWNRAANPRGARSSITMEEFNLGIFPRDSTEHPMNVPASSGHELTGWHTSSGDVSNSGGVPTTSWIGSSSNVHSLPNPSWSFNHEVPTEHLQRVSEFSPWSLFPSLSSASGVHNGHSTQSPSGPPSFTQGSSNNQSYLRMLMERRGSDVFSSPHSLRALAVDNEGRRRLISEIRQVLTAMRRGENLRAEDYMVFDPFLYHGMAEMHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDIINKLLKQQIYVSVMAESTTNLEPCCICQEEYADGENVGSLDCGHEFHSNCIKQWLIQKNMCPICKTTALAT 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi151g00020 704 MobiDBLite consensus disorder prediction 90 146 - -
Gabi151g00020 704 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 225 702 IPR045191 GO:0061630
Gabi151g00020 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 619 702 IPR013083 -
Gabi151g00020 704 MobiDBLite consensus disorder prediction 268 288 - -
Gabi151g00020 704 MobiDBLite consensus disorder prediction 120 146 - -
Gabi151g00020 704 SUPERFAMILY RING/U-box 639 701 - -
Gabi151g00020 704 Pfam Ring finger domain 657 698 IPR001841 -
Gabi151g00020 704 SMART ring_2 657 697 IPR001841 -
Gabi151g00020 704 FunFam E3 ubiquitin-protein ligase MBR2 624 702 - -
Gabi151g00020 704 ProSiteProfiles Zinc finger RING-type profile. 657 698 IPR001841 -
Gabi151g00020 704 MobiDBLite consensus disorder prediction 1 30 - -
Gabi151g00020 704 MobiDBLite consensus disorder prediction 500 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi151g00020 Gabi-Chr151 129511 134886 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi151g00020 19 704 C3H Transcription Factor Family AT2G15530 37.127 4.32e-115 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi151g00020 - K19041 gmx:100809024 1144.8