Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi151g00019 ATGACTGAAGAAGATCAAGGTCCGCATGATCAGATGATGGGTACCATGTGTGAAACCCAATCATGGGGTCTCTCCAATTGTGAAAACACAGGTGGAATCAAAGAGAATTCAACCGTGAAGCCTCTCAACCAAGGAGATGGAGGAAATGAAGGAGAAGCTCTCATGAATAATAAGCGAAGCCGAGGGAATGCTAGTGGAACTGAGAAGAATGTTGTTATTAGTGGTGAAGCAAGACATGGAAAGCGTCTCGAATCTGAGCATGAAATGCATATATGGACCGAGAGAGAAAGGAGGAAGAAAATGAGGAATATGTTTGCTAGTCTTCATGCTTTGCTTCCTCAGCTTCCTTCTAAGGCTGACAAATCAACCATTGTGGATGAAGCAGTGAGCTACATAAAAAATCTAGAGCAAACTCTGGAGAAGCTAGAAAAACAAAAACAAGAAAGGCTCCAATCTGTCTCCACTTTTGGGTGTGAGTCATCTGTGATGAACTCGCAGTGGCATCCTTATGATTCAAGGCAAGCATTCATTACTGCTAATCAGGGACCTTCTAACAATGTGTCCAGTGCAATGGTTACTTCAAATCCTTCAAATTCACTTTCATCCCCTGAGCAGCCCATAGCTTTTCAAACTTGGACTTCTCCGAATGTAGTATTGAACATTTGTGGAGATGAAGCACAATTCTGCATATGGGCAGCCAAGAAGCCAGGCCTCTTTACCACCATTGCTTTTGTGTTGGAGAAGCACAACATAGATGTCATCTCTGCCAACATTTTGTGCAATGGTAATGGAAACGGATACATGATTCTAGCCCGTGCAAAAAGGGCTTCACATTCATTCTCAGGTGCAAATTCAGTGGAGGAAACTTACAGGCAAGCGGCTGGAGAGATTATGATATGGATCACTTAA 909 0.429 MTEEDQGPHDQMMGTMCETQSWGLSNCENTGGIKENSTVKPLNQGDGGNEGEALMNNKRSRGNASGTEKNVVISGEARHGKRLESEHEMHIWTERERRKKMRNMFASLHALLPQLPSKADKSTIVDEAVSYIKNLEQTLEKLEKQKQERLQSVSTFGCESSVMNSQWHPYDSRQAFITANQGPSNNVSSAMVTSNPSNSLSSPEQPIAFQTWTSPNVVLNICGDEAQFCIWAAKKPGLFTTIAFVLEKHNIDVISANILCNGNGNGYMILARAKRASHSFSGANSVEETYRQAAGEIMIWIT 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi151g00019 302 Gene3D - 84 156 IPR036638 GO:0046983
Gabi151g00019 302 CDD bHLH_AtbHLH_like 90 143 IPR045239 -
Gabi151g00019 302 Pfam Helix-loop-helix DNA-binding domain 89 136 IPR011598 GO:0046983
Gabi151g00019 302 MobiDBLite consensus disorder prediction 30 68 - -
Gabi151g00019 302 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 85 135 IPR011598 GO:0046983
Gabi151g00019 302 SMART finulus 93 141 IPR011598 GO:0046983
Gabi151g00019 302 MobiDBLite consensus disorder prediction 30 44 - -
Gabi151g00019 302 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 88 161 IPR036638 GO:0046983
Gabi151g00019 302 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 40 301 IPR044278 GO:0003700|GO:0006355|GO:0009960
Gabi151g00019 302 Coils Coil 125 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi151g00019 Gabi-Chr151 120442 125356 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi151g00019 22 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 36.977 1.75e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi151g00019 HLH 4.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi151g00019 - - aprc:113859839 328.176