Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi151g00018 ATGCCTGGCAGTTTAGAACCGTTGGATTTGGGGGTTCAGATTCCCTACCACTTCAGGTGCCCAATCTCGCTCGAACTCATGCGAGACCCTGTCACGGCGTGCACCGGTCAGACCTACGACCGAGCCAGCATCGAGTCATGGGTCGCCACAGGCAACAGCACATGTCCCGTCACGCGAGCCCCTCTCACCGATTTCACTCTAATCCCCAATCACACCCTCCGTCGCCTTATCCAAGATTGGTGCGTCGCTAACCGCGCTTTCGGGGTTGAGCGAATCCCCACTCCCAAACAGCCAGCTGACCCTGCCCTCGTTCGCTCCTTGCTTAACCAAGCCTCCTCTAATTCCGCTCCCAAACAGCTCCGTCTAACCTCGATTCGTCGACTCAGAGGACTCGTTCGTGACTCAGACAAGAATCGCGCTCTCATTGCCTCACTCAACGTTCCCCACTTCTTACTCCCTATTGTTTTCAACAACCACGCTTCAGACGAGTTGGCTCACGAGTCGCTTGCTCTACTCGTCCTGTTCCCACTCGCTGAGTCCGAATGCGCCTCCATAGCTTCCGACTCGGATAAGATTAGCTTCCTATCGCGTCTTCTCTCTCACCCTTCCGTCGATGTCCGAGTCAACTCGGCGGCTCTGATCGAGATCGCCGTCGCCGGAACTCACTCGCCGGAGCTTCGCGCTCAGGTTAGCAATGTCGACGAAATCTACGACGGCGTCATCGATATACTCAGGAACCCGATCTCGTACCCGCGAGCTCTCAAGATCGGGATCAAGGCCTTGTTCGCGCTGTGCCTGGTGAAGCAGACGCGGCAGAAAGCGGTGGTGGCCGGAGCGCCGGGAATCCTCGTCGACCGGCTTGCGGATTTCGAGAAATGCGATGCGGAAAGGGCGCTGGCGACGGTGGAACTGCTGTGCCGGATTCCGGCTGGTTGCACGGCGTTCGCCGAACACGCCCTGACGGTGCCGATGCTGGTGAAGATAATACTGAAGATATCAGATCGCGCGACGGAGTACGCCGCCGGAGCGCTGCTGTCGCTGTGCTCGGAATCGGAACTGTGCCAGAGGGAAGCGGTGGCGGCGGGGGTGTTGACTCAGCTGCTGTTGTTGGTACAGAGTGATTGCACGGAGAGAGCGAAGAGGAAGGCGCAGTTGTTGCTGAAGCTTCTTCGGGATTCGTGGCCTCAAGATTCCATCGGAAATTCTGACGGTTTTGGCATGTGGGAATCTTGTGATTATTGGGTGGAAAGAAAACATTTGATGCCATTTGGTGAAGTACACGTTTCTGATAGCTCCATAGACGGAAGTGTTTTTGACTTCCAAGGAATATCATTTTGA 1338 0.5613 MPGSLEPLDLGVQIPYHFRCPISLELMRDPVTACTGQTYDRASIESWVATGNSTCPVTRAPLTDFTLIPNHTLRRLIQDWCVANRAFGVERIPTPKQPADPALVRSLLNQASSNSAPKQLRLTSIRRLRGLVRDSDKNRALIASLNVPHFLLPIVFNNHASDELAHESLALLVLFPLAESECASIASDSDKISFLSRLLSHPSVDVRVNSAALIEIAVAGTHSPELRAQVSNVDEIYDGVIDILRNPISYPRALKIGIKALFALCLVKQTRQKAVVAGAPGILVDRLADFEKCDAERALATVELLCRIPAGCTAFAEHALTVPMLVKIILKISDRATEYAAGALLSLCSESELCQREAVAAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSIGNSDGFGMWESCDYWVERKHLMPFGEVHVSDSSIDGSVFDFQGISF 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi151g00018 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Gabi151g00018 445 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Gabi151g00018 445 SUPERFAMILY ARM repeat 103 390 IPR016024 -
Gabi151g00018 445 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Gabi151g00018 445 Gene3D - 92 404 IPR011989 -
Gabi151g00018 445 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Gabi151g00018 445 CDD RING-Ubox_PUB 15 67 IPR045210 -
Gabi151g00018 445 PANTHER WDSAM1 PROTEIN 12 396 IPR045185 GO:0061630
Gabi151g00018 445 FunFam RING-type E3 ubiquitin transferase 8 90 - -
Gabi151g00018 445 SUPERFAMILY RING/U-box 12 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi151g00018 Gabi-Chr151 99548 101499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi151g00018 1 406 U-box Gene Family AT3G19380 66.586 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi151g00018 - - var:108341190 674.085