Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi151g00012 ATGGCTACCCCAAATAAATCAACTCTAGTAATGCCTTCAGAATCCTTGGAACAGATGGGAAAAAATACCACTGAATCAAATGCAAACATGCCTCAATGTCCTTTAAGCCCACAACTCCGTAGCTCCTTAGATGGTCCGGTAGCTATCCTTTGGGATATTGAAAATTGTTCTGTTCCAAGTGATGTGCGCCCTGAAGATGTGGCAGGTAATATAAGAATGGCTTTACGGGTGCACCCAGTAATTAGAGGAGCTGTTATGATGTTTTCTGCTTATGGGGATTTCAATGCTTTCCCTAGGCGACTTAGAGAGGGCTGTCAGAGAACTGGTGTTAAACTCATTGATGTTCCCAATGGGAGAAAAGATGCTGCTGACAAAGCTATCTTGGTCGACATGTTCTTATTTGCACTTGACAACCCTCCACCATCCTCTATCATGCTAATATCTGGAGATGTTGATTTTGCACCAGCCCTTCACATTCTCGGTCAGCGGGGATATACTGTAATTCTTGTCATCCCTGCTGGGGTGGGTGTTTCTTCTGCCCTATGCAATGCTGGTAAATTTGTCTGGGACTGGCAGAGTGTGGTTCGTGGAGAGGGCTTTGTTCCCCCTTCAAAGGCCTTAGTGCCGCCTCGTGGAGGTTCTGTTGAGCTTACTGGATATTTGATGGGATGTCATATCAATGACAATTCTGATGGTCCAAATGAAGAAGAAGCAATAGTTTATAGGGGGATGTCACATAGCTATTATAACTCGAGGGAATTCTCAATGGTGTCACAATCTCTCTCTGAATACAATGGTGGCACATCGAACATGTCTTGCTTGCCGACAACTTTGAGATCACATAGTCTTCCATCTGGATTGAATGATGCTTCAGGAGGACCTATGCCTTATAGTGACCATAATGAATGCCCATTATGGGTGCAGCCTGGGGATTTAAATGGTCTCAAGGGCCAGCTGGTAAGGTTGCTTGAACTTTCTGGAGGATACCTGCCTCTGGCCCGAGTTCCAGCAGAGTACCAGAAAACTTATGGGAGACCTCTTTATGTAGCTGAATATGGGGCAATGAAGTTGGTTAATCTTTTCAAGAAGATGGGTGATACCATGACTGTGGAAGGGAAAGGGCATCATAAAATTGTGTGTCTCAGGAACTGGAAGGCTGGCCCAAGTGCTCCTCCCCTATCTCTGGCAAAGAAAGATAAGAAAGGAAAGGGGAGCCAGGAAAAGAATGCGTATGTTGTCACTGGTAGCTGCTCTTCGGATGAGTTCTCAGATGAAGATAGATTAGTCATAGAAGAACTTGATGAAAGAAGTTGCACAGGAAAGGGTAATCAGGGGAGACCAGCCAGATGTGAAATTGATGACCGTATTCTTGAGCAGTTCAAGTTCGAGCTGCAAGAGATTCTAGTCAGCTATTCTTGTCGAATATTCCTAGGTTGTTTTGAGGCTATATACCAGCAAAGGTACAAGAAACAATTGGAATATCAGAGATTTGGTGTGGACAAGTTGGAGGATTTGTTGGAGAAAGTGAATGATGTGGTAGTATTGCATGAGGAACCGGTAAGCAAGAGGAAGTTCCTTGCTGCTGTGGGTGGTTAG 1596 0.4461 MATPNKSTLVMPSESLEQMGKNTTESNANMPQCPLSPQLRSSLDGPVAILWDIENCSVPSDVRPEDVAGNIRMALRVHPVIRGAVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPAGVGVSSALCNAGKFVWDWQSVVRGEGFVPPSKALVPPRGGSVELTGYLMGCHINDNSDGPNEEEAIVYRGMSHSYYNSREFSMVSQSLSEYNGGTSNMSCLPTTLRSHSLPSGLNDASGGPMPYSDHNECPLWVQPGDLNGLKGQLVRLLELSGGYLPLARVPAEYQKTYGRPLYVAEYGAMKLVNLFKKMGDTMTVEGKGHHKIVCLRNWKAGPSAPPLSLAKKDKKGKGSQEKNAYVVTGSCSSDEFSDEDRLVIEELDERSCTGKGNQGRPARCEIDDRILEQFKFELQEILVSYSCRIFLGCFEAIYQQRYKKQLEYQRFGVDKLEDLLEKVNDVVVLHEEPVSKRKFLAAVGG 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi151g00012 531 CDD PIN_limkain_b1_N_like 46 172 - -
Gabi151g00012 531 ProSiteProfiles OST-type HTH domain profile. 456 530 IPR025605 -
Gabi151g00012 531 Gene3D - 452 523 IPR041966 -
Gabi151g00012 531 Gene3D - 311 381 IPR041966 -
Gabi151g00012 531 PANTHER LIMKAIN B LKAP 24 495 IPR024768 GO:0005777|GO:0010468
Gabi151g00012 531 CDD LOTUS 312 381 - -
Gabi151g00012 531 CDD LOTUS 457 519 - -
Gabi151g00012 531 Pfam NYN domain 46 186 IPR021139 GO:0004540
Gabi151g00012 531 Pfam OST-HTH/LOTUS domain 457 519 IPR025605 -
Gabi151g00012 531 Pfam OST-HTH/LOTUS domain 313 379 IPR025605 -
Gabi151g00012 531 Gene3D - 41 193 - -
Gabi151g00012 531 ProSiteProfiles OST-type HTH domain profile. 311 383 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi151g00012 Gabi-Chr151 63284 66498 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi151g00012 43 197 C2H2 Transcription Factor Family AT5G61190 41.290 1.04e-27 116