Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1509g00010 ATGGCTCGACAACTGTGTGAAGACAAATCGAGGGACATGGTGTCTTCAACTGGATTCTGCTACACGGATGTATCATCGGGTAACCAAACGATGCAAACTCATCTAGTGAACCAGATCCAAGGCTTTGTCTCCGACTCGGAGATGTTCAACCTCACCGCAGGCATGGAAATGATAGGGTTTCCAAAGAACGTTCAGCAGCAACAGAGTGACACCAACTCAGTCATGTGGAAAAGTTTCTTCGGAAGACCTGGTCAACATCCAGGTCCTTCCTCTTCCAAGACTATGAACGAGTCTAGTAGTAATTTCTACCAGCATGAGTACAGTAACAAACCAGATTTCACATCAGGGATTTCAGAAACAAGTGGTGAGAATCTAATCGATGGAGCTCATGATTCAGTTCCATGGCAAGAGAATAGATTACTCGTTGATGATTCTTCTTTGAGGTGTGTGTTCCCTTGTGAAGGAAACGAAAGGCCAAGTCAAGGTCTTTCACTCTCTCTTAGTTCAAACAATCCTTCCAGTATTGGCTTGCAATCTTTTGAGCTAAGACAACCTGATTTTGTTTCGTCGAGTTCCAGAGAGGGACTCTTCGGGAAATCCACGAATGTTCATCAACAGCAACAACAACAACAACAACAGATGTTGCAAGATGGGTATTTGAGTGCTAAAGCTGCGAATCTTTATCAAGGACATTTCCTGCTCAAGAACTCCAAGTACTTGATACCTGCACAGGACCTTCTGAACGAGTTTTGTTGTTTGGGCACGAAGCAAAGCGATTTGCCAAAGCAAAAGCCCAACAAGAACAAGCAGTGGGAAGAGGATAACGGTAGCAGTTCCTCAAAGAAGCACTCTCTTACATCTCTAGAGTTCGTGGAATTGCAGAAGAGAAAGACAAAGCTGCTTTCGATGCTGGAAGAGGTTGACAGAAGGTACAGGCACTACCGTAATCAGATGAAGGCGGTGGTATCGTCGTTTGAAGCAGTGGCTGGCAATGGAGCTGCCACAGTGTACTCGGCTTTGGCTTTGAAAGCCATGTCGAGACATTTCAGATGTTTAAAGGATGGAATATTGGGTCAGATTCAGGCGACAAGGAAAGCCATGGGAGAGAAAGATCCAGTTGCACCAGGCACAACAAGGGGTGAAACCCCTAGGCTCAAAGTCATTGACCAAGCACTGAGACAACAAAGGGCCTTTCAACAAATGAGCATGATGGAAACCCATCCTTGGAGACCCCAACGTGGTCTTCCCGAGCGATCCGTCTCCGTTCTGAGGGCTTGGCTTTTTGAGCATTTTCTCCATCCGTACCCAAGCGATGTTGATAAACATATATTAGCCCGCCAAACTGGTCTCTCGAGAAGCCAGGTATCGAATTGGTTTATTAATGCAAGGGTGAGGCTATGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAAGTGAAGGAGCGTGAAAACAATATGGCTTCCTCGGAAGGGGGTAACGATCCCAACGATGAAATTAACCCGAATGTTCAAAACCTACCATCTTCATCACGTCCTGAGGATCAGAAGCCAACACCGGATCGCCTTGTTCGAATTGACTCCGAGTGTGTGTCCACCATCATCAATCACCATAACCCTGATAACAAAAACGACCCAAAGAGCAGCACCAAAACACTCCAGAACCACCACCACCACATGAATCCCCAAGAACAATGTTTGGGACGAGTCACGGACACATTTGGGTCTGTGGAGCTTGATTTTTCATCTTACGCGCACCACTCATCCGGCATGGTTTCTTTCAATAGTAATGATCAGAATGCCAACCAGAGCTTCAACGGTGGAGTGTCTTTGACGCTAGGGTTACAGCAGCATGCAGGAGGAAGCGGGGTGAGCTTAGCGTTTCCACCAGCAACTCAGAGTTCACTGTTCTATCCAAGAGACCAGATTGAAGAATGTCAAACAGTTCAGTACTCTCTTTTGGATGGCGAAGGACAAAATCTACCATACAGGAATTTGATGGGCGCACAGCTTCTCCATGACTTGGCAGGATAG 2031 0.4643 MARQLCEDKSRDMVSSTGFCYTDVSSGNQTMQTHLVNQIQGFVSDSEMFNLTAGMEMIGFPKNVQQQQSDTNSVMWKSFFGRPGQHPGPSSSKTMNESSSNFYQHEYSNKPDFTSGISETSGENLIDGAHDSVPWQENRLLVDDSSLRCVFPCEGNERPSQGLSLSLSSNNPSSIGLQSFELRQPDFVSSSSREGLFGKSTNVHQQQQQQQQQMLQDGYLSAKAANLYQGHFLLKNSKYLIPAQDLLNEFCCLGTKQSDLPKQKPNKNKQWEEDNGSSSSKKHSLTSLEFVELQKRKTKLLSMLEEVDRRYRHYRNQMKAVVSSFEAVAGNGAATVYSALALKAMSRHFRCLKDGILGQIQATRKAMGEKDPVAPGTTRGETPRLKVIDQALRQQRAFQQMSMMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEVKERENNMASSEGGNDPNDEINPNVQNLPSSSRPEDQKPTPDRLVRIDSECVSTIINHHNPDNKNDPKSSTKTLQNHHHHMNPQEQCLGRVTDTFGSVELDFSSYAHHSSGMVSFNSNDQNANQSFNGGVSLTLGLQQHAGGSGVSLAFPPATQSSLFYPRDQIEECQTVQYSLLDGEGQNLPYRNLMGAQLLHDLAG 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1509g00010 676 MobiDBLite consensus disorder prediction 534 559 - -
Gabi1509g00010 676 Gene3D - 412 474 - -
Gabi1509g00010 676 FunFam BEL1-like homeodomain protein 4 412 474 - -
Gabi1509g00010 676 SMART HOX_1 409 473 IPR001356 GO:0003677
Gabi1509g00010 676 MobiDBLite consensus disorder prediction 482 520 - -
Gabi1509g00010 676 MobiDBLite consensus disorder prediction 80 122 - -
Gabi1509g00010 676 MobiDBLite consensus disorder prediction 262 279 - -
Gabi1509g00010 676 SUPERFAMILY Homeodomain-like 410 475 IPR009057 -
Gabi1509g00010 676 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 168 491 - -
Gabi1509g00010 676 MobiDBLite consensus disorder prediction 85 122 - -
Gabi1509g00010 676 MobiDBLite consensus disorder prediction 488 513 - -
Gabi1509g00010 676 Pfam Homeobox KN domain 426 465 IPR008422 GO:0003677|GO:0006355
Gabi1509g00010 676 CDD homeodomain 409 470 IPR001356 GO:0003677
Gabi1509g00010 676 Pfam Associated with HOX 234 356 IPR006563 -
Gabi1509g00010 676 SMART prehox3 228 358 IPR006563 -
Gabi1509g00010 676 MobiDBLite consensus disorder prediction 258 281 - -
Gabi1509g00010 676 ProSiteProfiles 'Homeobox' domain profile. 406 469 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1509g00010 Gabi-Chr1509 200414 205218 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1509g00010 137 675 Homeobox Transcription Factor Family AT5G41410 48.027 3.67e-146 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gabi1509g00010 POX 1.7e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1509g00010 - - tcc:18606572 971.074