Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1509g00005 ATGGATATCAAAGAGGAAGAGTCAATGAAGAGGGTTTTGACTCACGGAGGTGGATACGTGCAGTACAATGTGTACGGTACCTTGTTCGAGGTCTCCTCCAAGTACCTCCCTCCCATTCGCCCTATCGGTAGAGGCGCTTATGGCTTCGTCTGTTCTGCTGTTAATTCAGATACACATGAGGAAGTTGCCATCAAGAAGATTGGTAACGCATTTGATAATATAATTGATGCTAAAAGGACTTTGAGGGAAATTAAGCTCCTTCGCCACATGGATCATGAAAATATCATTGCCATTAAGGATATCATACGGCCTCCCAAAAAGGATACTTTCAATGATGTATACATTGTTTATGAATTGATGGACACTGATCTTCATCATATAATTCGTTCTAATCAATCTCTTAACGATGACCATTGTCAGTACTTTTTATACCAGCTGTTACGTGGGCTGAAATATGTGCATTCAGCTAATGTCTTGCACCGTGATCTTAAGCCCAGTAATTTACTTCTGAATTCAAACTGTGACCTCAAAATTGGGGACTTTGGTTTGGCAAGGACAACATCTGAAACAGATTTCATGACAGAGTACGTTGTCACCCGATGGTACCGAGCCCCAGAATTGCTCCTTAATTGTTCAGAGTACACCTCTGCAATTGATGTTTGGTCTGTTGGTTGCATACTTGGTGAAATTAAGACCAGAAAACCCTTGTTTCCTGGGAAAGATTATGTTCATCAGCTAAGGCTTATAACAGAGTTAATAGGTTCACCTGACGATGCAAGCCTTGGATTTCTCCGAAGTGAAAATGCCAGAAGATATGTTAGACAGCTTCCACAATGCAGGAAGCAAAAATTCTCGGCTAGATTCCCTGATATGTCGCCTGAGGCTTTGGATCTACTAGAAAAGATGCTTATCTTTGATCCCAACAAACGCATAACAGTTGATGAGGCATTATGTCACCCATATCTTTCTTCACTTCACGACATCAATGATGAGCCAGTTGGTCCCAGGCCTTTCAGTTTTGATTTTGAGCAGCCAACATTCAGTGCAGAGCACATCAAAGAGCTCATCTGGATGGAATCAGTGAACTTCAACCCAGATCCACCCTGTCAGTAA 1113 0.4187 MDIKEEESMKRVLTHGGGYVQYNVYGTLFEVSSKYLPPIRPIGRGAYGFVCSAVNSDTHEEVAIKKIGNAFDNIIDAKRTLREIKLLRHMDHENIIAIKDIIRPPKKDTFNDVYIVYELMDTDLHHIIRSNQSLNDDHCQYFLYQLLRGLKYVHSANVLHRDLKPSNLLLNSNCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTSAIDVWSVGCILGEIKTRKPLFPGKDYVHQLRLITELIGSPDDASLGFLRSENARRYVRQLPQCRKQKFSARFPDMSPEALDLLEKMLIFDPNKRITVDEALCHPYLSSLHDINDEPVGPRPFSFDFEQPTFSAEHIKELIWMESVNFNPDPPCQ 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1509g00005 370 Gene3D Transferase(Phosphotransferase) domain 1 120 349 - -
Gabi1509g00005 370 SMART serkin_6 36 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1509g00005 370 ProSitePatterns Protein kinases ATP-binding region signature. 42 66 IPR017441 GO:0005524
Gabi1509g00005 370 Gene3D Phosphorylase Kinase; domain 1 19 359 - -
Gabi1509g00005 370 FunFam Mitogen-activated protein kinase 21 130 - -
Gabi1509g00005 370 ProSitePatterns MAP kinase signature. 71 174 IPR003527 GO:0004707|GO:0005524|GO:0006468
Gabi1509g00005 370 FunFam Mitogen-activated protein kinase 120 348 - -
Gabi1509g00005 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 34 323 - -
Gabi1509g00005 370 SUPERFAMILY Protein kinase-like (PK-like) 39 330 IPR011009 -
Gabi1509g00005 370 CDD STKc_TEY_MAPK 29 365 - -
Gabi1509g00005 370 ProSiteProfiles Protein kinase domain profile. 36 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1509g00005 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 158 170 IPR008271 GO:0004672|GO:0006468
Gabi1509g00005 370 Pfam Protein kinase domain 40 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1509g00005 Gabi-Chr1509 141946 144803 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1509g00005 5 365 MAP Kinase Gene Family AT4G01370 81.994 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Gabi1509g00005 Pkinase 1.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1509g00005 - - gmx:100803024 678.322