Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1509g00004 ATGGGTCATCATTCTTGCTGCAACCAACAGAAGGTTAAGCGAGGGCTTTGGTCCCCCGAGGAAGATGAGAAACTCATTAGATACATTACCACTCATGGCTATGGCTGCTGGAGTGAAGTTCCAGAGAAAGCAGGGCTTCAAAGATGTGGTAAGAGTTGTCGCCTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGCAGGTTTACACCTGAGGAGGAGAAGTTAATTATAAGCCTTCATGGGGTCGTTGGCAACAGATGGGCTCACATTGCAAGCCACTTGCCTGGTAGGACTGACAATGAAATAAAGAACTATTGGAATTCATGGATCAAAAAGAAAATACGAAAGCCTTCGGTGCCTTCAATGAGCACTTCACAAAGTGTTGATCATACCCTGTTCAATTATAATTCGAATCAACTAGATCACTTTGTCAACCAAGAAAATATAACAGCAAAACCACCACCGGTACAAGAAACCCTATTTTCTTCCACATGCCCGCTATTTATGTTTGACACTAGTTCACTAGATGGGACAACAGCAGATACCAATGTACGAGGAGAACTCTTTCAAGATACTATGGGTTTGAGCTCTGAAACGTGGAACTTAAGCCACCATCAAGTCCAAGCCCTTCCTCCTCATCCAGCGGCAAATTTTACAGCAGCTGCAGTCATGGATAATACGAATTATCTACCACCATTGTTAGAGAACGTGGAAAACATGGTGCCAATTGAAGTACAGTCTTGCAATATGGACGAGGAAAGAGAAATAGCACTGGAGTGCTTGCAGAGACAAGAGTTGAATGAGTGGGTTGAGACCCAACAACATTGTCCTAGCTTTCTTTTCTGGGACAGTGTTGAAGGACAACTTGGAGGGGAAGAACTACCTCCAAATTCATCAAATATGGGAACAAACACACTTTCTCCTTTTCCTTACAAAGGGATAAAGATCATCACTGAGAAGAACCGTAGAGAGATATGCAAATACCTCTTCCAAGAGGGAGTTTGCTTTGCGAAGAAGGACTACAATCTGGCAAAGCACCCGGAGATTGATGTGCCGAATCTTCAGGTGATAAAGCTGATGCAAAGTTTCAAATCGAGGGAGTACGTGAGGGAGACATTTGCTTGGATGCACTATTACTGGTTCCTAACCAACGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCATCTGAAATCGTTCCAGCCACTCTGAAGAAGCAAGCTAAGCCCGCTGGAAGACCATTTGGTGGCCCACCCGGCGATCGTCCTAGGGGTCCACCTCGCTTTGATGGAGAAAGGAGATTTGGTGACCGTGATGGATACCGTGGAGGTCCCCGGGGTCCTGGTGGTGACTTTGGAGACAAGGGTGGTGCACCTGCTGACTACAGGCCTTCTTTTGGGGGTCCTGGTGGAAGGCCTGGCTTCGGTCGTGGTGCTGGTGGTTTTGGAGCGCCAACTAGTTCAAATGCTCCTTAA 1485 0.4599 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSVPSMSTSQSVDHTLFNYNSNQLDHFVNQENITAKPPPVQETLFSSTCPLFMFDTSSLDGTTADTNVRGELFQDTMGLSSETWNLSHHQVQALPPHPAANFTAAAVMDNTNYLPPLLENVENMVPIEVQSCNMDEEREIALECLQRQELNEWVETQQHCPSFLFWDSVEGQLGGEELPPNSSNMGTNTLSPFPYKGIKIITEKNRREICKYLFQEGVCFAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFDGERRFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGFGAPTSSNAP 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1509g00004 494 CDD SANT 69 112 IPR001005 -
Gabi1509g00004 494 Pfam Plectin/S10 domain 319 410 IPR005326 -
Gabi1509g00004 494 MobiDBLite consensus disorder prediction 407 494 - -
Gabi1509g00004 494 FunFam Transcription factor MYB26 68 137 - -
Gabi1509g00004 494 MobiDBLite consensus disorder prediction 428 444 - -
Gabi1509g00004 494 FunFam MYB transcription factor 6 66 - -
Gabi1509g00004 494 CDD SANT 17 61 IPR001005 -
Gabi1509g00004 494 Gene3D - 318 420 IPR036388 -
Gabi1509g00004 494 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi1509g00004 494 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi1509g00004 494 SMART sant 66 114 IPR001005 -
Gabi1509g00004 494 SMART sant 13 63 IPR001005 -
Gabi1509g00004 494 PANTHER MYB DOMAIN PROTEIN 55 1 235 - -
Gabi1509g00004 494 Gene3D - 6 66 - -
Gabi1509g00004 494 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi1509g00004 494 Gene3D - 68 134 - -
Gabi1509g00004 494 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi1509g00004 494 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gabi1509g00004 494 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi1509g00004 494 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi1509g00004 494 FunFam 40S ribosomal protein S10 317 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1509g00004 Gabi-Chr1509 128651 136038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1509g00004 1 304 MYB Transcription Factor Family AT1G63910 51.226 3.12e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1509g00004 S10_plectin 1e-41 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1509g00004 K09422 K02947 gmx:100803556 750.355