Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1506g00010 ATGGGAGATACACAAAGTTGCAATCGTAGAGCTTTTAATTCTGGATTGAATCATGGTCGAATGCAGACTTTGAAAGTTGGAGTTTACAACGAGATTCTTAGTCGGCTTAGGGAATTGAATGCTCCAGAGGTTACTGTTCCTGATTTTGAAGATGAACTTTGGGTGCACTTCTATCTCCTTCCCACTAGGTATGCATTGGATATGAATGTGGAGAGGGCCCAAGATGTTCTTATGCATAAAAGGTTACAGCATATGGCACGAGCTATTGCTCCTAGACCTGCAGTTGAAGTCCGTCTTGTGCAGGTTCATTCTGCTTCTGGAGTGCATTGTAGCAAATCCCTTGATTCAAACTTACCAAGAGAAACCAGTCCTCAAGATTCTGATATTCCCGGCAACATGAGGCATGATTCTGTGAAAATTTACTTGCCCTTGTCCTTTTCCTCTTTACACTACTGCAGGGCTGTGCATGAAATCACAATTTCAACAAACGATAAGCCAAAACTTTTCAGTCAGTTGACTTCCTTATTGTCTGAAACTGGGCTGAACATTCAAGAAGCACATGCTTTTTCAACGTTGGATGGATATTCATTGGATGTTTTTGTTGTTGATGGTTGGGCTGTCGAGGACACTGAGAAGCTAAAACATGTTCTGACAAAGAAAATTCAGAAATTCGAGAAGCAGCCATGGTTAAATGAAAGTGGCAGTCATCCTATGGAGAAGCTACAGCAAACTGGGATCAACTGTATCTCTAACCATGTAAATATGCCCATTAGTGGAAATTTTGACTGGGAAATTGATGCAAGCTGTTTAAGATTTGAAAAGCAAATTGCATCTGGATCTGTCAGTGATTTGTATAAAGGCACTTACTGTAATCAAGATGTGGCTATCAAAGTCCTTAAGGATAGTAATCTGAATGAAGATATACAGAGAGAGTTTTCTCAGGAAGTCTATATCCTGAGTAAAATTCAGCACCAGAATGTTATCAAATTTATTGGTGCCTGCACAAAACCAAACCTTTATCTTGTCACAGAATATATGTCTGGTGGAAGTATGTATGACTTTCTGCATATACAGAAGGTCGTCCTTACTCTTCCATCTTTGCTCAAAGTAGCCATTGATGTTTCCGAAGGAATGAATTACTTGCATCAGAACAATATTATACATAGAGACCTCAAAGCTGCTAATCTTTTGATAGATGACAGTGGGGTAGTTAAGGTTGCTGATTTTGGTGTAGCCAGATTGCAAGATCAATCTGGTATCATGACTGCAGAAACTGGAACTTACAGGTGGATGGCTCCTGAGGTTATTGAACATAAGCCATATAATCACAAAGCAGATGTTTTTAGCTTCGGGATTATACTTTGGGAGCTGCTCACAGGAAAGCTTCCTTATGAACATTTGTCCCCATTGCAAGCAGCAATTGGAGTGGTACAGAAGGATTTGAGGCCTGAAGTTCCAAGAGATACTCATCCAAAGATAGTGGAATTGCTTCACCAGTGCTGGCACCAAGATCCATCTTTAAGACCTGATTTCTCAGAAATTCTAATGTTTCTGCAGCATATTACTAAGATGGTTACAGGGAAGGGGAAGAGGAAGGTTGAATGCATGAGAAAGAATATTCATTGA 1626 0.4004 MGDTQSCNRRAFNSGLNHGRMQTLKVGVYNEILSRLRELNAPEVTVPDFEDELWVHFYLLPTRYALDMNVERAQDVLMHKRLQHMARAIAPRPAVEVRLVQVHSASGVHCSKSLDSNLPRETSPQDSDIPGNMRHDSVKIYLPLSFSSLHYCRAVHEITISTNDKPKLFSQLTSLLSETGLNIQEAHAFSTLDGYSLDVFVVDGWAVEDTEKLKHVLTKKIQKFEKQPWLNESGSHPMEKLQQTGINCISNHVNMPISGNFDWEIDASCLRFEKQIASGSVSDLYKGTYCNQDVAIKVLKDSNLNEDIQREFSQEVYILSKIQHQNVIKFIGACTKPNLYLVTEYMSGGSMYDFLHIQKVVLTLPSLLKVAIDVSEGMNYLHQNNIIHRDLKAANLLIDDSGVVKVADFGVARLQDQSGIMTAETGTYRWMAPEVIEHKPYNHKADVFSFGIILWELLTGKLPYEHLSPLQAAIGVVQKDLRPEVPRDTHPKIVELLHQCWHQDPSLRPDFSEILMFLQHITKMVTGKGKRKVECMRKNIH 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1506g00010 541 SUPERFAMILY ACT-like 154 230 IPR045865 -
Gabi1506g00010 541 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 128 525 - -
Gabi1506g00010 541 ProSiteProfiles Protein kinase domain profile. 270 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1506g00010 541 SMART serkin_6 270 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1506g00010 541 PRINTS Tyrosine kinase catalytic domain signature 445 467 IPR001245 GO:0004672|GO:0006468
Gabi1506g00010 541 PRINTS Tyrosine kinase catalytic domain signature 380 398 IPR001245 GO:0004672|GO:0006468
Gabi1506g00010 541 PRINTS Tyrosine kinase catalytic domain signature 426 436 IPR001245 GO:0004672|GO:0006468
Gabi1506g00010 541 PRINTS Tyrosine kinase catalytic domain signature 343 356 IPR001245 GO:0004672|GO:0006468
Gabi1506g00010 541 PRINTS Tyrosine kinase catalytic domain signature 489 511 IPR001245 GO:0004672|GO:0006468
Gabi1506g00010 541 MobiDBLite consensus disorder prediction 111 130 - -
Gabi1506g00010 541 SUPERFAMILY Protein kinase-like (PK-like) 257 523 IPR011009 -
Gabi1506g00010 541 Coils Coil 207 227 - -
Gabi1506g00010 541 CDD STKc_MAP3K-like 276 518 - -
Gabi1506g00010 541 FunFam Serine/threonine-protein kinase isoform 1 260 347 - -
Gabi1506g00010 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 386 398 IPR008271 GO:0004672|GO:0006468
Gabi1506g00010 541 ProSiteProfiles ACT domain profile. 157 235 IPR002912 -
Gabi1506g00010 541 Pfam Protein tyrosine and serine/threonine kinase 270 517 IPR001245 GO:0004672|GO:0006468
Gabi1506g00010 541 Gene3D Transferase(Phosphotransferase) domain 1 348 540 - -
Gabi1506g00010 541 Gene3D Phosphorylase Kinase; domain 1 259 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1506g00010 Gabi-Chr1506 101320 116180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1506g00010 5 532 MAP Kinase Kinase Kinase AT4G35780 52.603 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gabi1506g00010 PK_Tyr_Ser-Thr 2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1506g00010 - - gmx:100818047 725.702