Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1506g00001 ATGGGACTAGTATTTGGGCGCTTTATGGGTTTTTGCCGAAGAACCAAGTCCCATGAAATTGTCATTGTCTCCTCAGATTCCTCTCCTCAGCATACCCACAAACAATCTAGGAAAACCCAACAAATGCCAACTCCACCTCCTCCTCCTCCTCCTCGTCGTACCAAACATACCCAATCTTCACAAATACGACCAATTTTAGGAAAACCGTACGTTAACATAAACTTGATGTACGAGATGAAGAAAGAACTAGGAAGAGGCCAATCGGGTGTCACTTATCTATGTACTGAGAAAACGACAGGAAGAGAGTATGCGTGCAAATCTATTCCAAGGGAGAAGCTATTGAGCCAACATGAAATTGATGATGTTAGAAGAGAGGTTATGATTCAGCAACATCTTTCAGGGCAACCCAACATAGTGGAATTCAGGGGAGCTTTTGAGGATAGGCAGAACGTGCACCTAGTGATGGAGTTGTGTAGTGGGGGTGAACTCTTTGACCGCATTATGGCCAAAGGGAGTTACTCTGAGCGTGAAGCAGCCATAGTTATGCGGCAAGTTGTGAATGTGGTTCACGTGTGCCATTTCATGGGTGTAATGCATCGAGATCTCAAGCCAGAGAATTTCTTGTTGGCTACCAAGGACGAGAATGCTGCAGTTAAAGCCACTGATTTTGGACTCTCCATTTTCTTTGAGGAAGGAAAAATGTATGAAGAAGTTGTTGGAAGTGCATACTACATAGCTCCAGAGGTATTAAATCGGAATTATGGAAAAGAGATAGATGTGTGGAGTGCAGGAGTTATTTTATACATCCTCCTAAGTGGGGTTCCTCCATTTTGGGCTGACAACGAGAAAGGCATATTTGAAGCTATTTCGGGAGGTAAGCTCGATCTGGATAGTGCACCATGGCCTTCTATTTCAGCTGCTGCAAAAGATTTGATAAGGAAAATGTTGGCTTTTGATCCTAAGAAACGCATTACAGCTTCTGATGCCCTAGAACACCCATGGATGAAGGAAGTTGGTGAAGCATCTGACAAGCCTATAGACAATGCTGTTTTATTTAGGCTGAAACAGTTCAGAGCAATGAACAAGATGAAGAAACTTGCTTTGAAGGTAATAGCAGAAAACCTTTCAGAGGAGGAAATCATAGGCTTGAAACAAATGTTCAACAATATGGATATTGATCGCACTGGCACAATCACATATGAAGAACTCAAATTTGGATTGTCCAGATTGGGATCCAAGCTAAATGAATATGAAATAAAGCAGCTAATGGATGCTGCTGATGTTGACCAAAGCGGGACTATTGACTATCAAGAATTCATTACTGCCACTATAAACCGACATAAACTTGAGAAGGAAGCGAATTTGTTTAAGGCTTTTCAATACTTTGACAAGGATAACAGCGGTTATATAACAAGAGATGAGCTTAGACAAGCATTGACTGAATATCAAATGGGAGATGAAGCAACCATTAATGAAGTCATCGATGATGTTGACACTGACAAAGATGGTCACATTAATTACCAGGAGTTTGTAGCTATGATGAGAAAGGGTCTTAACCAACCACTCCGACTAATTTAG 1578 0.4144 MGLVFGRFMGFCRRTKSHEIVIVSSDSSPQHTHKQSRKTQQMPTPPPPPPPRRTKHTQSSQIRPILGKPYVNINLMYEMKKELGRGQSGVTYLCTEKTTGREYACKSIPREKLLSQHEIDDVRREVMIQQHLSGQPNIVEFRGAFEDRQNVHLVMELCSGGELFDRIMAKGSYSEREAAIVMRQVVNVVHVCHFMGVMHRDLKPENFLLATKDENAAVKATDFGLSIFFEEGKMYEEVVGSAYYIAPEVLNRNYGKEIDVWSAGVILYILLSGVPPFWADNEKGIFEAISGGKLDLDSAPWPSISAAAKDLIRKMLAFDPKKRITASDALEHPWMKEVGEASDKPIDNAVLFRLKQFRAMNKMKKLALKVIAENLSEEEIIGLKQMFNNMDIDRTGTITYEELKFGLSRLGSKLNEYEIKQLMDAADVDQSGTIDYQEFITATINRHKLEKEANLFKAFQYFDKDNSGYITRDELRQALTEYQMGDEATINEVIDDVDTDKDGHINYQEFVAMMRKGLNQPLRLI 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1506g00001 525 Gene3D Transferase(Phosphotransferase) domain 1 163 343 - -
Gabi1506g00001 525 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Gabi1506g00001 525 SMART efh_1 454 482 IPR002048 GO:0005509
Gabi1506g00001 525 SMART efh_1 418 446 IPR002048 GO:0005509
Gabi1506g00001 525 SMART efh_1 489 517 IPR002048 GO:0005509
Gabi1506g00001 525 SMART efh_1 382 410 IPR002048 GO:0005509
Gabi1506g00001 525 ProSitePatterns EF-hand calcium-binding domain. 427 439 IPR018247 -
Gabi1506g00001 525 MobiDBLite consensus disorder prediction 22 40 - -
Gabi1506g00001 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Gabi1506g00001 525 FunFam Calcium-dependent protein kinase 1 343 518 - -
Gabi1506g00001 525 PANTHER SERINE/THREONINE-PROTEIN KINASE 71 510 - -
Gabi1506g00001 525 ProSiteProfiles EF-hand calcium-binding domain profile. 450 485 IPR002048 GO:0005509
Gabi1506g00001 525 FunFam Calcium-dependent protein kinase 1 79 162 - -
Gabi1506g00001 525 FunFam calcium-dependent protein kinase 1 163 342 - -
Gabi1506g00001 525 ProSiteProfiles Protein kinase domain profile. 77 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1506g00001 525 MobiDBLite consensus disorder prediction 22 63 - -
Gabi1506g00001 525 Gene3D - 376 444 - -
Gabi1506g00001 525 SMART serkin_6 77 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1506g00001 525 ProSitePatterns EF-hand calcium-binding domain. 463 475 IPR018247 -
Gabi1506g00001 525 SUPERFAMILY Protein kinase-like (PK-like) 77 345 IPR011009 -
Gabi1506g00001 525 Gene3D Phosphorylase Kinase; domain 1 79 162 - -
Gabi1506g00001 525 Pfam EF-hand domain pair 454 515 IPR002048 GO:0005509
Gabi1506g00001 525 Pfam EF-hand domain pair 383 443 IPR002048 GO:0005509
Gabi1506g00001 525 ProSiteProfiles EF-hand calcium-binding domain profile. 486 520 IPR002048 GO:0005509
Gabi1506g00001 525 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Gabi1506g00001 525 Pfam Protein kinase domain 77 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1506g00001 525 CDD STKc_CAMK 77 334 - -
Gabi1506g00001 525 ProSiteProfiles EF-hand calcium-binding domain profile. 414 449 IPR002048 GO:0005509
Gabi1506g00001 525 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Gabi1506g00001 525 Gene3D - 353 514 - -
Gabi1506g00001 525 SUPERFAMILY EF-hand 374 515 IPR011992 -
Gabi1506g00001 525 ProSitePatterns EF-hand calcium-binding domain. 498 510 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1506g00001 Gabi-Chr1506 19526 34421 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1506g00001 1 517 EF-hand Containing Proteins AT3G20410 62.454 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi1506g00001 Pkinase 1.7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1506g00001 K13412 - gmx:100816157 816.609