Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1503g00006 ATGATCATTAGGTTCCACATGATAGCTTTGGTCTTTTTCCTGTGGCTGTTTGTCCCGTCGTTGAGTAAAGACCTTCTAAACTGTGATACAACATCACCATATACCTCTGGCTACCATTGCAATGAAAAAGGGTCACAAAACCAATGTGAAACATTTGCACTCTTTCTTACCAACTCTTACTACTCATCACTTTCCAACCTGAGTTTTTACTTGGGACTCAATCCGTTTGCAATAGCAAAAGCAAATGGTTTCTCTTCAGAAACTGAGTTTCTCTCCCAGGATCAGCCTCTTCTTATACCAATTGATTGCAAATGCAAAGGTGGTTTTTTTCTGGCTGAGTTAACCAAAACTACCATCAAAGGAGAGAGCTTTTATGGTATTGCTCAATCACTTGAGGGCTTGACAACTTGCAAGGCTATTAGGGACAACAACCCTGGTGTATCACTTTGGAATCTTGATGGTAAAGTGAGATTGCTTATTCCATTGAGATGTGGTTGTCCATTTTCATCTCAAGTTAGACCACAACCAAGACTTTTGCTTTCTTATCCTGTAAGTGAAGGTGACACACTTTCTAATTTGGCCTCAAAGTTCAATATTACTAAAGAAGCTATTATTTCTGCAAATAACATATCATCAGAAGAAGGCCCTAGACCTAGAAGCCTTGCACCCTTTACCTCTATTCTGATTCCACTATATGGTAACCCTATCCTTGGTCCTCTGGCTAAACAAAGGGAGCCCAATTTGGGTTTTTCAACAACCAGCATCCCAGTGATTAGTCCACACAAGAAGCCAACAATGTGGAAGACTAAATTGTATATTGGGGCAGCTGGGGTTGCACTTGGAGTCTGCATTGCTTTTGGGGCAGCTTTGTTTTTTATCAGATTGAAGCACAAGAAGGAGGAAGAGAATTCAAGCAAAGAAGGAGATATGGAGCTGCAACATCTGAATCATAGTGTAAGAACCACTAGTGATAAGAAAGTTTCATTTGAGGGGTCTCAGGATGCACTTGATGGGAAAATTATTGATGCCACACCGCGTAAGATGTTGTTGGAGACATACACTATTGAAGATATGAGAAAAGCAACTGAGGATTTCAGTTCAAGCAGTCACATTGAGGGATCAGTATTTCATGGTCGTCTAAATGGTAAGAACATGGCAATCAAAAGAACAAAGACAGAAATAGTGTCAAAGATAGATCTTGGCCTTTTCCATGATGCACTTCACAACCATCCCAACATACTTAGGCTACTGGGAATGAGTTTGTTGGAGGGGCCAGAGTCATATTTGGTTTTTGAGTATGCCAAAAATGGTTCATTGAAAGATTGGCTTCATGGTGGCTTGGCCATCAAGAACCAGTTCATTGCTTCTTGCTATTGTTTCCTGACTTGGAGCCAAAGGCTCAGGATCTGTCTTGATGTGGCCAGTGCCTTGCAGTATATGCACCATGTTATGAATCCAAGTTATGTGCATAGAAATGTAAAAAGCAGGAACATCTTTTTAGATGAAGAATTTGGTACCAAGATAGGAAATTTTGGGATGGCAGGGTGTGTTGAGAATGACACTGAGGACCCACTTTTCTATTCCACCAACCCTGCCACTTGGAGTCTTGGTTATTTGGCACCTGAATATGTGCACCAAGGTATAATTTCCCCAAGCATTGATATCTTTGCTTATGGGGTGGTTTTGTTGGAAATTTTGTCTGGTCAAACACCAATAAGCAAGCCTAATGATAAGGGTGAAGGAAGCATTTGGCTAACAGATAAAATCAAGTCCATTTTGAAGTCAGAAAATGTGAATGAACTAAGGGAGTGGATAGACAGTGCATTAGGTGAGAATTATTCATTTGATGCAGCAGTGACAGTGGCCAATATTGCTAGAGCTTGTGTGGAGGAAGATTCTTGTTTGAGACCAAGTGCAAGGGAAATTGTTGAGAAGCTATCAACGTTGGTGGAGGAATTACCAGAAGGGGAACAACACATTATAATGAGTGAAAGCTCAAGCAAACCTCTGGTGAAGACAGTAGTAGGAAACATTGTGTGA 2040 0.4078 MIIRFHMIALVFFLWLFVPSLSKDLLNCDTTSPYTSGYHCNEKGSQNQCETFALFLTNSYYSSLSNLSFYLGLNPFAIAKANGFSSETEFLSQDQPLLIPIDCKCKGGFFLAELTKTTIKGESFYGIAQSLEGLTTCKAIRDNNPGVSLWNLDGKVRLLIPLRCGCPFSSQVRPQPRLLLSYPVSEGDTLSNLASKFNITKEAIISANNISSEEGPRPRSLAPFTSILIPLYGNPILGPLAKQREPNLGFSTTSIPVISPHKKPTMWKTKLYIGAAGVALGVCIAFGAALFFIRLKHKKEEENSSKEGDMELQHLNHSVRTTSDKKVSFEGSQDALDGKIIDATPRKMLLETYTIEDMRKATEDFSSSSHIEGSVFHGRLNGKNMAIKRTKTEIVSKIDLGLFHDALHNHPNILRLLGMSLLEGPESYLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWSQRLRICLDVASALQYMHHVMNPSYVHRNVKSRNIFLDEEFGTKIGNFGMAGCVENDTEDPLFYSTNPATWSLGYLAPEYVHQGIISPSIDIFAYGVVLLEILSGQTPISKPNDKGEGSIWLTDKIKSILKSENVNELREWIDSALGENYSFDAAVTVANIARACVEEDSCLRPSAREIVEKLSTLVEELPEGEQHIIMSESSSKPLVKTVVGNIV 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1503g00006 679 SUPERFAMILY Protein kinase-like (PK-like) 349 646 IPR011009 -
Gabi1503g00006 679 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 20 653 - -
Gabi1503g00006 679 ProSiteProfiles Protein kinase domain profile. 361 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1503g00006 679 Gene3D Phosphorylase Kinase; domain 1 341 433 - -
Gabi1503g00006 679 CDD LysM 181 218 IPR018392 -
Gabi1503g00006 679 SUPERFAMILY LysM domain 181 212 IPR036779 -
Gabi1503g00006 679 ProSiteProfiles LysM domain profile. 180 229 IPR018392 -
Gabi1503g00006 679 Pfam Protein kinase domain 373 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1503g00006 679 Pfam LysM domain 182 220 IPR018392 -
Gabi1503g00006 679 FunFam PTI1-like tyrosine-protein kinase 3 434 659 - -
Gabi1503g00006 679 Gene3D LysM domain 180 230 IPR036779 -
Gabi1503g00006 679 SMART LysM_2 181 230 IPR018392 -
Gabi1503g00006 679 Gene3D Transferase(Phosphotransferase) domain 1 434 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1503g00006 Gabi-Chr1503 97236 99275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1503g00006 37 672 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 40.299 5.38e-148 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gabi1503g00006 Pkinase 7.6e-31 CL0016