Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1500g00012 ATGAAGAAGATGTTTGGAATGTCATGTGGTGGCAATGATGAAGAAGCAGATGAGAAAGAGATTGAAACAAAGGACGATGGCAGCCAATACAGCTTAACAGGCATTCTTCTTCCATCTCTTGGTGCCACCGCCGCACGTGGCAGCCGGAGACCTAAGCTCCGCCGTTTCATTATCTCCCCTAGTAACCATCGTTACAAACTTTGGGAGAGGTTTCTTGTGATATTGGTTTTCTACACAGCATGGGTGTGTCCGTTTGAATTTGGATTCCTACTTGAGAAATCAAAGGGTGCACTACTGATTGTAATGGACAATGTTGTGAATGTGATTTTTGCTATTGACATTGTTCTCACCTTCTTCGTTGCCTACCTGGACAAATCTTCTTATTTGCTCATTGACAACCCTAAGCTCATTGCTTTGAGATATGCTAAGTCATGGTTGATCTTGGATGTTATGTCTACCATTCCTTATGAAGTTGTTTGCATTGTGTTGCCGTCTTATCTTCAAACCTATGGCTACTTCAATATTCTCCGCCTTTGGCGCCTCCGTAGAGTCAGTGCCATGTTTGCAAGATTAGAAAAGGACAGGAATTATAACTACTTCTGGGTGCGCTGTTCAAAGCTTATGTGTGTTACTCTATTCTCAGTGCATGTTGCTGCCTGCTTTTACTATTTCATTGCTGCACGGCGTGAACGAAAATCTACATGGCTTGGACTTGTTTCTGATTCCTATGACGACAGTTTGTGGGGCCGCTATGTGACATCAATATACTGGTCCATTGTGACTCTTTCATCTGTTGGTTATGGTGATCTGCATCCTGTAAATATAACCGAAATGACATTTGACATCTTCTATATGCTCTTTAATCTTGGACTTACCGCGTATCTGATAGGAAACATGACCAATTTGGTTGTCCACCGGACTAATAGAACTAAGAGATATAGAGACACTGTCCAATCTGCCTCATATTTTGCCCAAAGGAACAAGCTACCTATTCTTTTGCAAGAACAGATATTTGCTCATTTGCTTATGAAGTACAGAACTGATTTAGAAGGACTGCAGCAGCAAGAGATCCTTGATTCCCTTCCAAAAGCCATTCATTCTAGCATCTCAAACTACCTTTTCTATTCACTTGTTGACAAAGTGTACTTGTTTCGTGGAGTGTCAAATGACCTACTTTTTCAACTGGTCACGGAGATGAAGGCAGAGTATTTTCCTCCAAAGGAAGACGTGATTTTGCAGAATGAAGCACCAACTGACTTTTATATAATGGTCACTGGAGCTGCTGATCTTATCATTAAAAAGAATGGAATAGAACAGGTTGTTGGTGAGGCAAAGACAGGAGATGTAGTTGGGGAAACAGGAGTACTATGTTACAGGCCACAGCTGTTTACAGTTCGGACCAAGCGATTGAGCCAGCTTCTGCGTTTGAATCGAACTGCATTTCTAAATCTTGCTCATTCAAATGTTGGAGATGGAACAATAATCATGAATAATTTTCTTCAGCATATGCATGAATCAGGGGATCCAGTGAAGCAAGGAATTTTGGCAGAAACAGAGGCAATGCTGGTTCGAGGCAAAATGGATTTGCCTATCAGTTTATTGTTTGCAGCTAACAGAGGTGACGATATATTGCTGCTTAAGTTGCTGAAGAAGGGTTCAGATCCAAATGAAACAGAAAAGAATGGAAAGACAGCACTGCATATTGCAGCTTCTAAAGGCAGTGACCATTGTGTAGCTCTGCTTCTAGAATATGGAACTGATCCCAACATCCAAGATTTAAATGGAAGTGTCCCACTATGGGAAGCAATTATGGGTAGGCATGAATCTGTCATGAAACTTCTAGTAGACAACGGCGCAGACATATCATCTGCTGATGTTGGCCATTTTGCATGCACTGCTGTTGAGCAAAATAACTTAGAATTGCTCGAGTACATTGTTCACTATGGTGGGGACGTGACACGGTCCACAACCAATGGAACCACTGCACTGCATGCAGCAGTTTGTGAAGGGAATGTTGAAATAGTTAAGTTCCTTCTAGACCAAGGAGCAGACATTGATAAGCAAGATGATAATGGCTGGACTCCAAGGGCATTTGCAGATCATCAATGCCATGAAGAAATACAAAATATATTTCAGAAAAGAGGACAGAACAAAACACCTAGTGCTATTCCTCAAGTATCAAAGAATGGAGAGTCCTATGTTTGGAGGTGTCAAAGTGAACCCTTTATGCCTGCCATTCCACAAGGAAGCATTCCACCTAATCAAGAGTCGACATGGTTTGATAATCGTCAGAGAAGAAGGGCCAGCCCTTTACGAAATTCATTTTTTGGAATGATGTCAGCTGCCAAACGTGACAAAAGAGATTCCCCAACATCTCAAAGCAGTCACACTACTACTCCAAAGGTGAATGAATTATCAGCCAGAGTAACGCTTAGTTGTCCAGAAAAAGGTGAAAGTGCCAAAAAGCTTGTGTTTCTGCCAAAGTCCATTGAAGAACTGCTACATATTGGTGCCCAAAAGTTTGACTTTTCTCCCACCAGAATTTTGACCAAAGAAGGAGCTGAAGTTGAAGACATAAACGTGATAAGAGACGGTGATCATCTTATTCTTGTACGGGACTGA 2622 0.4165 MKKMFGMSCGGNDEEADEKEIETKDDGSQYSLTGILLPSLGATAARGSRRPKLRRFIISPSNHRYKLWERFLVILVFYTAWVCPFEFGFLLEKSKGALLIVMDNVVNVIFAIDIVLTFFVAYLDKSSYLLIDNPKLIALRYAKSWLILDVMSTIPYEVVCIVLPSYLQTYGYFNILRLWRLRRVSAMFARLEKDRNYNYFWVRCSKLMCVTLFSVHVAACFYYFIAARRERKSTWLGLVSDSYDDSLWGRYVTSIYWSIVTLSSVGYGDLHPVNITEMTFDIFYMLFNLGLTAYLIGNMTNLVVHRTNRTKRYRDTVQSASYFAQRNKLPILLQEQIFAHLLMKYRTDLEGLQQQEILDSLPKAIHSSISNYLFYSLVDKVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDFYIMVTGAADLIIKKNGIEQVVGEAKTGDVVGETGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNLAHSNVGDGTIIMNNFLQHMHESGDPVKQGILAETEAMLVRGKMDLPISLLFAANRGDDILLLKLLKKGSDPNETEKNGKTALHIAASKGSDHCVALLLEYGTDPNIQDLNGSVPLWEAIMGRHESVMKLLVDNGADISSADVGHFACTAVEQNNLELLEYIVHYGGDVTRSTTNGTTALHAAVCEGNVEIVKFLLDQGADIDKQDDNGWTPRAFADHQCHEEIQNIFQKRGQNKTPSAIPQVSKNGESYVWRCQSEPFMPAIPQGSIPPNQESTWFDNRQRRRASPLRNSFFGMMSAAKRDKRDSPTSQSSHTTTPKVNELSARVTLSCPEKGESAKKLVFLPKSIEELLHIGAQKFDFSPTRILTKEGAEVEDINVIRDGDHLILVRD 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1500g00012 873 SUPERFAMILY cAMP-binding domain-like 308 503 IPR018490 -
Gabi1500g00012 873 Pfam Ion transport protein 66 310 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi1500g00012 873 Gene3D - 65 304 - -
Gabi1500g00012 873 Pfam Ankyrin repeats (3 copies) 533 624 IPR002110 GO:0005515
Gabi1500g00012 873 Pfam Ankyrin repeats (3 copies) 633 707 IPR002110 GO:0005515
Gabi1500g00012 873 SUPERFAMILY Ankyrin repeat 533 715 IPR036770 -
Gabi1500g00012 873 SMART ANK_2a 625 654 IPR002110 GO:0005515
Gabi1500g00012 873 SMART ANK_2a 658 687 IPR002110 GO:0005515
Gabi1500g00012 873 SMART ANK_2a 561 590 IPR002110 GO:0005515
Gabi1500g00012 873 SMART ANK_2a 594 623 IPR002110 GO:0005515
Gabi1500g00012 873 SMART ANK_2a 528 557 IPR002110 GO:0005515
Gabi1500g00012 873 PRINTS EAG/ELK/ERG potassium channel family signature 78 85 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi1500g00012 873 PRINTS EAG/ELK/ERG potassium channel family signature 251 268 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi1500g00012 873 PRINTS EAG/ELK/ERG potassium channel family signature 114 123 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi1500g00012 873 PRINTS EAG/ELK/ERG potassium channel family signature 277 288 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi1500g00012 873 PRINTS EAG/ELK/ERG potassium channel family signature 295 304 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi1500g00012 873 PRINTS EAG/ELK/ERG potassium channel family signature 103 113 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi1500g00012 873 FunFam Potassium channel KAT3 67 305 - -
Gabi1500g00012 873 PRINTS Ankyrin repeat signature 674 688 IPR002110 GO:0005515
Gabi1500g00012 873 PRINTS Ankyrin repeat signature 562 577 IPR002110 GO:0005515
Gabi1500g00012 873 ProSiteProfiles Ankyrin repeat region circular profile. 658 690 - -
Gabi1500g00012 873 ProSiteProfiles Ankyrin repeat profile. 561 593 IPR002110 GO:0005515
Gabi1500g00012 873 SUPERFAMILY Voltage-gated potassium channels 60 304 - -
Gabi1500g00012 873 ProSiteProfiles cAMP/cGMP binding motif profile. 383 502 IPR000595 -
Gabi1500g00012 873 ProSiteProfiles Ankyrin repeat profile. 594 626 IPR002110 GO:0005515
Gabi1500g00012 873 ProSiteProfiles Ankyrin repeat profile. 658 690 IPR002110 GO:0005515
Gabi1500g00012 873 ProSiteProfiles Ankyrin repeat region circular profile. 594 625 - -
Gabi1500g00012 873 Gene3D Jelly Rolls 351 509 IPR014710 -
Gabi1500g00012 873 MobiDBLite consensus disorder prediction 780 803 - -
Gabi1500g00012 873 ProSiteProfiles Ankyrin repeat region circular profile. 561 592 - -
Gabi1500g00012 873 Gene3D - 530 713 IPR036770 -
Gabi1500g00012 873 ProSiteProfiles KHA domain profile. 808 873 IPR021789 -
Gabi1500g00012 873 Pfam KHA, dimerisation domain of potassium ion channel 808 870 IPR021789 -
Gabi1500g00012 873 SMART cnmp_10 383 500 IPR000595 -
Gabi1500g00012 873 PANTHER POTASSIUM CHANNEL AKT1 28 871 IPR045319 GO:0005249|GO:0006813
Gabi1500g00012 873 Pfam Cyclic nucleotide-binding domain 403 487 IPR000595 -
Gabi1500g00012 873 MobiDBLite consensus disorder prediction 1 25 - -
Gabi1500g00012 873 CDD CAP_ED 383 488 IPR000595 -
Gabi1500g00012 873 FunFam Potassium channel KAT2 371 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1500g00012 Gabi-Chr1500 100875 107081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1500g00012 10 872 Ion Channels AT4G32500 59.725 0.0 1021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1500g00012 K21867 - gmx:100808832 1316.21