Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1500g00006 ATGTCGATCTCTACGACCATTGCTGGGCATTCGAGCTCTTGGGCTACGGCACTCGTCATGATCTCCCCTTACACCTTCTCCGCCATCGGCATCGCCGTCGCAATCGGCGTCTCCGTCCTCGGCGCTGCCTGGGGGATTTACATAACCGGTAGTAGCTTGATCGGTGCTGCAATCAAGGCTCCCCGAATCACTTCCAAGAATCTCATTAGTGTAATCTTCTGTGAAGCTGTTGCTATATATGGTGTTATTGTGGCAATTATTCTACAAACAAAATTAGAGAGCGTTCCACCATCAAATATCTATGCACCGGAGTCTCTTAGAGCTGGATATGCAATCTTTGCTTCAGGAATTATCGTGGGCTTTGCGAATCTTGTTTGTGGATTGTGTGTAGGAATAATTGGAAGCAGCTGTGCATTGTCTGATGCTCAGAACTCCTCTCTCTTTGTGAAAATTCTTGTGATCGAGATCTTTGGTAGCGCACTTGGGTTATTTGGAGTTATTGTTGGAATTATTATGTCAGCTCAAGCAACGTGGCCCTCAAAAGTTTAG 549 0.4608 MSISTTIAGHSSSWATALVMISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPPSNIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPSKV 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1500g00006 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 26 88 - -
Gabi1500g00006 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 42 66 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gabi1500g00006 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 151 174 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gabi1500g00006 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 124 150 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gabi1500g00006 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 68 92 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gabi1500g00006 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 8 176 - -
Gabi1500g00006 182 Pfam ATP synthase subunit C 113 172 IPR002379 GO:0015078|GO:0033177|GO:1902600
Gabi1500g00006 182 Pfam ATP synthase subunit C 29 88 IPR002379 GO:0015078|GO:0033177|GO:1902600
Gabi1500g00006 182 Gene3D - 24 178 IPR035921 -
Gabi1500g00006 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 91 IPR035921 -
Gabi1500g00006 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 108 172 - -
Gabi1500g00006 182 SUPERFAMILY F1F0 ATP synthase subunit C 105 173 IPR035921 -
Gabi1500g00006 182 FunFam V-type proton ATPase proteolipid subunit 24 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1500g00006 Gabi-Chr1500 55969 60078 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1500g00006 7 181 Primary Pumps ATPases(2) AT2G25610 90.857 8.46e-109 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1500g00006 K03661 - csin:114317833 315.849