LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1500g00005	ATGTCGATCTCTACGACCATTGCTGGGCATTCGAGCTCTTGGGCTACGGCACTCGTCATGATCTCCCCTTACACCTTCTCCGCCATCGGCATCGCCGTCGCAATCGGCGTCTCCGTCCTCGGCGCTGCCTGGGGGATTTACATAACCGGTAGTAGCTTGATCGGTGCTGCAATCAAGGCTCCCCGAATCACTTCCAAGAATCTCATTAGTGTAATCTTCTGTGAAGCTGTTGCTATATATGGTGTTATTGTGGCAATTATTCTACAAACAAAATTAGAGAGCGTTCCACCATCAAATATCTATGCACCGGAGTCTCTTAGAGCTGGATATGCAATCTTTGCTTCAGGAATTATCGTGGGCTTTGCGAATCTTGTTTGTGGGTGTGTTTTCTTTTTTACCTACACCTTATTATATCTATGCAGGAAATTCCCCTGGTTTTCTGGCAGATTGTGTGTAGGAATAATTGGAAGCAGCTGTGCATTGTCTGATGCTCAGAACTCCTCTCTCTTTGTGAAAATTCTTGTGATCGAGATCTTTGGTAGCGCACTTGGGTTATTTGGAGTTATTGTTGGAATTATTATGTCAGCTCAAGCAACGTGGCCCTCAAAAGTTTAG	615	0.452	MSISTTIAGHSSSWATALVMISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPPSNIYAPESLRAGYAIFASGIIVGFANLVCGCVFFFTYTLLYLCRKFPWFSGRLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPSKV	204

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1500g00005	204	CDD	ATP-synt_Vo_c_ATP6F_rpt1	26	88	-	-
	Gabi1500g00005	204	PANTHER	V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT	150	198	-	-
	Gabi1500g00005	204	SUPERFAMILY	F1F0 ATP synthase subunit C	21	91	IPR035921	-
	Gabi1500g00005	204	Pfam	ATP synthase subunit C	29	88	IPR002379	GO:0015078\|GO:0033177\|GO:1902600
	Gabi1500g00005	204	Pfam	ATP synthase subunit C	148	194	IPR002379	GO:0015078\|GO:0033177\|GO:1902600
	Gabi1500g00005	204	SUPERFAMILY	F1F0 ATP synthase subunit C	108	195	IPR035921	-
	Gabi1500g00005	204	PRINTS	Vacuolar ATP synthase 16kDa subunit signature	68	92	IPR000245	GO:0033179\|GO:0046961\|GO:1902600
	Gabi1500g00005	204	PRINTS	Vacuolar ATP synthase 16kDa subunit signature	42	66	IPR000245	GO:0033179\|GO:0046961\|GO:1902600
	Gabi1500g00005	204	CDD	ATP-synt_Vo_c_ATP6F_rpt2	108	194	-	-
	Gabi1500g00005	204	Gene3D	-	24	134	IPR035921	-
	Gabi1500g00005	204	Gene3D	-	144	200	IPR035921	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1500g00005	Gabi-Chr1500	55965	60080	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1500g00005	9	203	Primary Pumps ATPases(2)	AT4G32530	82.759	3.08e-110	312

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1500g00005	K03661		-	csin:114317833	303.138