Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1499g00001 ATGATGAACCTCCTCATCCTCTTCTTCACCGTTCTTCTCTCTTTCCCCCTTCTTTCCCTCTCCGCAAACACCACCGCTTCAACCGCCCCTTGCCCTCTCAACTTCACCGTCCTCAGCGTCCTCAGCGGCGGCTCAAAACCCTCCTCCTTCGACTCCTCCGGCGGCAGCACTCGGTGCCAGTTCATCAACCAAGCGCTCCGTCTTGTTGATTCCGATTACCTTCGCCGAAGTGGGTTCTTCCTCCCTCCGTCGAACTCCTCCGAGTCATGCTGGAAAGACTTTCAATCTTACATCAACAAGTTCGACCCAAGCTTCGATATTCGTTCCTCGTGTGGATTACAAACAAGTTGGATCTCTGAGGGTTGCATCAACATCACCACAAAGCAACAATTCGAAGCCTCTGTTCCTCAATCATCGCTTCAAAATATGCAGGCAAATTGTAACCAATCTCTTGAGAATAACTCCCCTTGTGCTCTCTGCACCACAAGCTTGTCTAGTTTACCAGCTTTGGGACAATCCATTGGGAACCTTTCTGATTGCACGGGTTATCCTTCCGTTTATGCTGCTGCTTTCTCTAACCAGTTTGGGCCCACTGACCCTGGCACTGCAAAGTGTTTGTTCTCCCTTGATTTTACCTCTGGGGGTTCCTCTGGTGGCAAAAAGAAGGTTGTTATTGTGGTTGTCTCCATTGTTTGTGTCTTGGTTTTTTCATCCATAGTTCTTGGTTTTTGGGCTTATTGGAAATTGAATTACAAGATGAAAGGGGATGATAATGTTAATATTGCAGAGAGGGGTTTGGTTTCAGGGTTGGATTCGATGGACCAGAGTACTACTCTGATGAGGTTCACGATTGATGATGTTAAGAAGGCAACTAAGAACTTCTCAAGGGATAATATAATTGGGAGAGGGGGTTATGGGAATGTGTATAAAGGGTTACTGTCTGATGGGAGTGAAGTTGCGTTGAAGAGGTTCAAGAATGTTTCGGCTGCTGGTGATGCTAGCTTCACTCATGAAGTTGAGGTTATTGCGAGTGTTAGGCATGTGAACCTTGTTGCTTTGAGGGGTTATTGTTCTGCAACGACTCATTTAGAAGGTTACCAGAGGATTATTGTTTGTGATTTGATGAAAAATGGGAGTCTTCATGATCATTTGTTTGGTTCAATTGGGGATAAACTCAGTTGGCCAATCCGTCAGCAGATTGCTCTAGGAACGGCTAGGGGATTGGCTTATTTGCATTATGGGGCTCAGCCTTCCATCATTCATAGGGATATTAAAGCAAGCAATATACTTTTGGATGAGAGGTTTGAAGCTAAGGTAGCAGATTTTGGACTAGCAAAGTTCAACCCAGAGGGAATGACACATATGAGCACAAGGGTAGCTGGAACTATGGGGTATGTTGCTCCGGAGTATGCTTTGTATGGACAATTGACAGAGAGAAGTGATGTGTTCAGTTTTGGTGTTGTGCTTCTTGAGCTCTTGAGTGGGAGGAAGGCTCTTCAAATGAACAATGATGGTCAACCCTCTGCTTTGACTGATTGGGCTTGGTCATTAGTTAGAACAGGTAAAGCCTTGGATGTTATTGAAGATAGCATGCCTGAACCTGGTTCACCACAAGTTCTTGAGAAGTATGTGTTAATTGCTGTACTTTGTTCTCATCCACAGTTATATGCTAGACCAACAATGGATCAGGTTGTTAAAATGATGGAGACAGATGAATCAGTGCCCTCAATGCCGGAACGGCCAATCCCTTTTGTTGCTGGGAGGCTTGATATTGAGAGATCTGTGAGCAGTAGTGGCTCCGGTCAGCTATCTAGTCCAACCGGTTATCAAGCATATAGTGACCCCCATTCTTCTAATTCTATAGAAGGAAGAAGCTCAGGCTCCCGGATTTTGAGTACAGATTGA 1905 0.4525 MMNLLILFFTVLLSFPLLSLSANTTASTAPCPLNFTVLSVLSGGSKPSSFDSSGGSTRCQFINQALRLVDSDYLRRSGFFLPPSNSSESCWKDFQSYINKFDPSFDIRSSCGLQTSWISEGCINITTKQQFEASVPQSSLQNMQANCNQSLENNSPCALCTTSLSSLPALGQSIGNLSDCTGYPSVYAAAFSNQFGPTDPGTAKCLFSLDFTSGGSSGGKKKVVIVVVSIVCVLVFSSIVLGFWAYWKLNYKMKGDDNVNIAERGLVSGLDSMDQSTTLMRFTIDDVKKATKNFSRDNIIGRGGYGNVYKGLLSDGSEVALKRFKNVSAAGDASFTHEVEVIASVRHVNLVALRGYCSATTHLEGYQRIIVCDLMKNGSLHDHLFGSIGDKLSWPIRQQIALGTARGLAYLHYGAQPSIIHRDIKASNILLDERFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALQMNNDGQPSALTDWAWSLVRTGKALDVIEDSMPEPGSPQVLEKYVLIAVLCSHPQLYARPTMDQVVKMMETDESVPSMPERPIPFVAGRLDIERSVSSSGSGQLSSPTGYQAYSDPHSSNSIEGRSSGSRILSTD 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1499g00001 634 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 375 576 - -
Gabi1499g00001 634 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 129 618 - -
Gabi1499g00001 634 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 256 373 - -
Gabi1499g00001 634 Pfam Protein kinase domain 295 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1499g00001 634 ProSiteProfiles Protein kinase domain profile. 294 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1499g00001 634 SMART serkin_6 294 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1499g00001 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Gabi1499g00001 634 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Gabi1499g00001 634 SUPERFAMILY Protein kinase-like (PK-like) 276 584 IPR011009 -
Gabi1499g00001 634 Gene3D Phosphorylase Kinase; domain 1 264 373 - -
Gabi1499g00001 634 Gene3D Transferase(Phosphotransferase) domain 1 375 577 - -
Gabi1499g00001 634 Pfam SPARK 26 171 IPR043891 -
Gabi1499g00001 634 CDD STKc_IRAK 300 569 - -
Gabi1499g00001 634 MobiDBLite consensus disorder prediction 593 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1499g00001 Gabi-Chr1499 29110 31471 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1499g00001 4 613 Receptor kinase-like Gene Family AT2G48010 63.430 0.0 771
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Gabi1499g00001 Pkinase 2.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1499g00001 - - gmx:100800760 936.791