Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1498g00007 ATGTTTTCGTGGTTGGCAAGGATAGTTTCAGCGTGCTTGAGACCAGTGAGACGATATGCGCGTATGAGCAAGGATGATTTCAATGATGACTCTTCCACCAATGAAGATGCTCTCTTGTGGTGCAGGGACCTTGAGAAGCACTCTTGTGGTGAGTTCTCCTTCGCAGTGGTTCAGGCCAATGAAGTTATTGAGGATCATAGCCAGGTTGAGACCGGTTCTGATGCCGTCTTTGTTGGAGTCTATGATGGCCATGGTGGTCCCGAAGCTTCCCGGTTCATCAATGACCACCTCTTCCATAATCTTATGAGTGAAAGTAATGAAAGTTTTGTGTCGAATCTCATTACAGGGGTTGCTCAAGAAAATGGTTCTATCTCTGAAGACATTATTAGGAATGCTGTTTCTGATACTGAGGATGGGTTTCTGACTCTTGTTCGAAGGAGTTATGGAATAAAGCCATTGATAGCAGCAATGGGATCCTGTTGTCTGGTTGGTGTTATCTGGAAAGGGACATTATATATCGCTAATCTTGGAGACTCTCGTGCTGTAATTGGTTCTATAGGTGGATCTAACAAGATCATTGCTGAACAGTTGACCAGAGAGCACAACGCTAGCAAAGAGGAGGTTAGGCGAGAACTCAAGTCTTTGCACCCGGAAGATTCACAAATTGTAGTTATGAAGCATGGAACATGGCGCATTAAAGGCATCATCCAGGTATCCAGATCTATAGGAGATGCATATTTGAAGCAGCCAGAGTTCTCTTTTGATCCTTCATTCCCACGGTTCCACCTGCCTGAACCTATTCGCCGACCTGTGCTAACCGCAGAACCATCTGTATGTTCAAGAGTTTTACAGCCTAATGATAAATTCATCATATTTGCATCTGATGGACTTTGGGAACACATGACAAATCAGGAAGCTGCTGAGATTGTTCATAAAAGCCCGCGAACTGGTATTGCAAGAAGACTTCTTAGGGCTGCTTTGAATGAGGCAGCTAGGAAAAGGGAAATGAGATATAAAGACCTTCAGAAGGTTGAAAAGGGGATTAGGCGTTTTTTCCATGATGATATCACAGTGGTTGTTGTCTTCATTGACCATGAGTTGCTTGGGAAGAAGGTTACAGTTCCTGAGTTGTCCATCAAAGGATTTATTGACTCAGTTGGACCATCAAACTTTAGAAGTTTCCGGGAATTGGAATGA 1197 0.4361 MFSWLARIVSACLRPVRRYARMSKDDFNDDSSTNEDALLWCRDLEKHSCGEFSFAVVQANEVIEDHSQVETGSDAVFVGVYDGHGGPEASRFINDHLFHNLMSESNESFVSNLITGVAQENGSISEDIIRNAVSDTEDGFLTLVRRSYGIKPLIAAMGSCCLVGVIWKGTLYIANLGDSRAVIGSIGGSNKIIAEQLTREHNASKEEVRRELKSLHPEDSQIVVMKHGTWRIKGIIQVSRSIGDAYLKQPEFSFDPSFPRFHLPEPIRRPVLTAEPSVCSRVLQPNDKFIIFASDGLWEHMTNQEAAEIVHKSPRTGIARRLLRAALNEAARKREMRYKDLQKVEKGIRRFFHDDITVVVVFIDHELLGKKVTVPELSIKGFIDSVGPSNFRSFRELE 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1498g00007 398 ProSitePatterns PPM-type phosphatase domain signature. 77 85 IPR000222 GO:0043169
Gabi1498g00007 398 FunFam Probable protein phosphatase 2C 42 42 371 - -
Gabi1498g00007 398 Gene3D - 17 372 IPR036457 -
Gabi1498g00007 398 Coils Coil 194 214 - -
Gabi1498g00007 398 ProSiteProfiles PPM-type phosphatase domain profile. 51 363 IPR001932 -
Gabi1498g00007 398 PANTHER PROTEIN PHOSPHATASE 36 361 IPR015655 GO:0004722|GO:0006470
Gabi1498g00007 398 CDD PP2Cc 52 363 IPR001932 -
Gabi1498g00007 398 SUPERFAMILY PP2C-like 57 364 IPR036457 -
Gabi1498g00007 398 SMART PP2C_4 31 361 IPR001932 -
Gabi1498g00007 398 Pfam Protein phosphatase 2C 65 332 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1498g00007 Gabi-Chr1498 113307 117321 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1498g00007 1 394 PP2C-type Phosphatase Gene Family AT5G06750 68.812 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1498g00007 K01102 - gmx:100813740 676.396