Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1498g00005 ATGTTTTCGTGGTTGGCAAGGATAGTTTCAGCGTGCTTGAGACCAGTGAGACGATATGCGCGTATGAGCAAGGATGATTTCAATGATGACTCTTCCACCAATGAAGATGCTCTCTTGTGGTGCAGGGACCTTGAGAAGCACTCTTGTGGTGAGTTCTCCTTCGCAGTGGTTCAGGCCAATGAAGTTATTGAGGATCATAGCCAGGTTGAGACCGGTTCTGATGCCGTCTTTGTTGGAGTCTATGATGGCCATGGTGGTCCCGAAGCTTCCCGGTTCATCAATGACCACCTCTTCCATAATCTTATGAGGGTTGCTCAAGAAAATGGTTCTATCTCTGAAGACATTATTAGGAATGCTGTTTCTGATACTGAGGATGGGTTTCTGACTCTTGTTCGAAGGAGTTATGGAATAAAGCCATTGATAGCAGCAATGGGATCCTGTTGTCTGGTTGGTGTTATCTGGAAAGGGACATTATATATCGCTAATCTTGGAGACTCTCGTGCTGTAATTGGTTCTATAGGTGGATCTAACAAGATCATTGCTGAACAGTTGACCAGAGAGCACAACGCTAGCAAAGAGGAGGTTAGGCGAGAACTCAAGTCTTTGCACCCGGAAGATTCACAAATTGTAGTTATGAAGCATGGAACATGGCGCATTAAAGGCATCATCCAGGTATCCAGATCTATAGGAGATGCATATTTGAAGCAGCCAGAGTTCTCTTTTGATCCTTCATTCCCACGGTTCCACCTGCCTGAACCTATTCGCCGACCTGTGCTAACCGCAGAACCATCTGTATGTTCAAGAGTTTTACAGCCTAATGATAAATTCATCATATTTGCATCTGATGGACTTTGGGAACACATGACAAATCAGGAAGCTGCTGAGATTGTTCATAAAAGCCCGCGAACTGGTATTGCAAGAAGACTTCTTAGGGCTGCTTTGAATGAGGCAGCTAGGAAAAGGGAAATGAGATATAAAGACCTTCAGAAGGTTGAAAAGGGGATTAGGCGTTTTTTCCATGATGATATCACAGTGGTTGTTGTCTTCATTGACCATGAGTTGCTTGGGAAGAAGGTTACAGTTCCTGAGTTGTCCATCAAAGGATTTATTGACTCAGTTGGACCATCAAACTTTAGAAGTTTCCGGGAATTGGAATGA 1158 0.4396 MFSWLARIVSACLRPVRRYARMSKDDFNDDSSTNEDALLWCRDLEKHSCGEFSFAVVQANEVIEDHSQVETGSDAVFVGVYDGHGGPEASRFINDHLFHNLMRVAQENGSISEDIIRNAVSDTEDGFLTLVRRSYGIKPLIAAMGSCCLVGVIWKGTLYIANLGDSRAVIGSIGGSNKIIAEQLTREHNASKEEVRRELKSLHPEDSQIVVMKHGTWRIKGIIQVSRSIGDAYLKQPEFSFDPSFPRFHLPEPIRRPVLTAEPSVCSRVLQPNDKFIIFASDGLWEHMTNQEAAEIVHKSPRTGIARRLLRAALNEAARKREMRYKDLQKVEKGIRRFFHDDITVVVVFIDHELLGKKVTVPELSIKGFIDSVGPSNFRSFRELE 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1498g00005 385 ProSitePatterns PPM-type phosphatase domain signature. 77 85 IPR000222 GO:0043169
Gabi1498g00005 385 FunFam Probable protein phosphatase 2C 42 42 358 - -
Gabi1498g00005 385 Pfam Protein phosphatase 2C 65 319 IPR001932 -
Gabi1498g00005 385 CDD PP2Cc 52 350 IPR001932 -
Gabi1498g00005 385 Gene3D - 17 359 IPR036457 -
Gabi1498g00005 385 SUPERFAMILY PP2C-like 57 351 IPR036457 -
Gabi1498g00005 385 Coils Coil 181 201 - -
Gabi1498g00005 385 ProSiteProfiles PPM-type phosphatase domain profile. 51 350 IPR001932 -
Gabi1498g00005 385 PANTHER PROTEIN PHOSPHATASE 36 348 IPR015655 GO:0004722|GO:0006470
Gabi1498g00005 385 SMART PP2C_4 31 348 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1498g00005 Gabi-Chr1498 113307 117321 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1498g00005 1 381 PP2C-type Phosphatase Gene Family AT5G06750 71.355 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1498g00005 K01102 - gmx:100813740 687.952