LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1498g00002	ATGGATTTTTCTAGGCTAGTTAAACATCAGTTATTAGCTATCATCTTCATTTCCATCACCCTAACCAAAGTTAGTTGCTTTTATTTCAATTTCCCTACCTTCCAACCAGAGGATGATGCTGAATTATTGCTGAGCAAAAACTCAAAAATATACTTAGAGGCTATCCAAATAACCCCTGATATTCGTGGTGTAATAGCGAACTATTCTGGACGTACTTTCTACAAAAAGCCATACAAACTTTGGAGCAAGAAGAAGAACAAAATTGCTGATTTCAACACCACTTTTGTGCTTAACATTGGTCCCCAAACTTCACCTGGTGGAGAAGGCTTGGCCTTTATCTTAACTTCAGATACCACTCTCCCAGAAAACAGTTCAGGTGAATGGCTAGGTATTGTAAATGCTTCAACCAATGGAACTTCTCAATCTCCAATTCTTGCAGTGGAGTTTGACACACGAAAAAGTTTCACTGAAGATGGCCCCGACAACCATGTTGGCATCAACATAAATAGCATCTACTCAATAAAACAGGTACCTTTGATAAACTATGGGATCAATGTTTCATCTGGTATAAATGTAACGGTGAGGATTCAGTATTCCAATGATATAATATCTGTTTTTGGTTCCATGAATGGAACTTCAGAAGAATTTATGGAGACCCTTTTGGTATCTCCACCTCTTAATCTATCTTCCTATCTTCAAGAAGAGGTTTATCTTGGTTTCTCTGCTTCAACAAGTATATACACCGAGTTGAACTGTGTAAGAGCATGGGAATTTAACGGTATAGATATTGCAAATGATAATAAAATTCTATTGTGGATTTGGGTCACGGTAATTACAACTGTGATTACTATTATCATATGTGGGGTGGTTTTTTTCTTGGTTTGGAAAAGGAAACAAAGCATGGAGAAGCCAGAGGATGCATTTCCAAGAATAGAGGATCAAATTCAATACTCATCTATGGCTCCAAAGAAGTTTCGGTTAAGGGAAATCACAAAAGCAACGGGTGGTTTCAGCCTTCAAAATAAGCTTGGTCAAGGTGGTTTTGGAACAGTGTATAAGGGTCTATTGGAAAACAAGGAGATAGCTGTGAAGAGAGTTTCAAAGAACTCACGTCAAGGTAAGCAAGAATTCATAGCTGAAGTAACAACAATTGGAAGCCTTCACCACAGAAACCTTGTGAAACTCACAGGGTGGTGCTATGAGAGCAAAGAGCTTCTCCTTGTCTATGAGTTCATGCCTCATGGAAGCTTAGACAAGTACCTCTTTGGTGATGATAACAAGTTTGGTAATGACACACTGAATTGGAAAATTAGACACAGTATAATACATGGGGTGGCTCAAGCATTGGACTATCTTCACAATGGTTGTGAAAAGAGGGTTCTTCATAGAGACATCAAAGCCAGCAACATAATGTTGGACTCAGAATTCAATGCAAAATTGGGTGACTTTGGTTTGGCTCGTACAATTGAGAAGAGAAATGAAACTCACCATTCAACAAAAGAGATTGCAGGAACACCAGGTTACATGGCACCTGAAACCTTTCTCACAGGAAGGGCAACAGTGGAAACTGATGTTTATGCATTTGGTGTGCTTGTGTTGGAGGTTGTGTGTGGAAGGAGGCCAGGGGATTTGTGTTCAGAGGATGACTACAAGAACAGCATTGTGTATTGGGTGTGGAAGCTTTATGGCAAAGGAACAATAGTTAGTGCTGTGGATAAAAAGATGAGTAAAGAGGAAGAGATAAAGGAGGAAGAAGTGGAAAGTGTGCTTGTTCTTGGTTTGGCTTGTTGCCATCCAAACCCACATCAAAGACCATCTATGAGAACTGTTTTGCAAGTTCTCAATGGGGAAACACCTCCACCTATGGTACCTAAGGAAAGACCTGCTTTTGTTTGGCCTGCAATGCCTCAATCATTCAAAGAAGGTGAAGATACCTCACTCATCCAAGGATCAGCCACTCCAATATTCTCTGATATCAGTGGCAGATGA	1989	0.3982	MDFSRLVKHQLLAIIFISITLTKVSCFYFNFPTFQPEDDAELLLSKNSKIYLEAIQITPDIRGVIANYSGRTFYKKPYKLWSKKKNKIADFNTTFVLNIGPQTSPGGEGLAFILTSDTTLPENSSGEWLGIVNASTNGTSQSPILAVEFDTRKSFTEDGPDNHVGININSIYSIKQVPLINYGINVSSGINVTVRIQYSNDIISVFGSMNGTSEEFMETLLVSPPLNLSSYLQEEVYLGFSASTSIYTELNCVRAWEFNGIDIANDNKILLWIWVTVITTVITIIICGVVFFLVWKRKQSMEKPEDAFPRIEDQIQYSSMAPKKFRLREITKATGGFSLQNKLGQGGFGTVYKGLLENKEIAVKRVSKNSRQGKQEFIAEVTTIGSLHHRNLVKLTGWCYESKELLLVYEFMPHGSLDKYLFGDDNKFGNDTLNWKIRHSIIHGVAQALDYLHNGCEKRVLHRDIKASNIMLDSEFNAKLGDFGLARTIEKRNETHHSTKEIAGTPGYMAPETFLTGRATVETDVYAFGVLVLEVVCGRRPGDLCSEDDYKNSIVYWVWKLYGKGTIVSAVDKKMSKEEEIKEEEVESVLVLGLACCHPNPHQRPSMRTVLQVLNGETPPPMVPKERPAFVWPAMPQSFKEGEDTSLIQGSATPIFSDISGR	662

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1498g00002	662	CDD	lectin_legume_LecRK_Arcelin_ConA	27	259	IPR001220	GO:0030246
	Gabi1498g00002	662	ProSitePatterns	Protein kinases ATP-binding region signature.	343	364	IPR017441	GO:0005524
	Gabi1498g00002	662	Gene3D	Phosphorylase Kinase; domain 1	322	411	-	-
	Gabi1498g00002	662	SMART	serkin_6	337	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1498g00002	662	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	460	472	IPR008271	GO:0004672\|GO:0006468
	Gabi1498g00002	662	Pfam	Protein kinase domain	338	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1498g00002	662	Gene3D	-	25	269	-	-
	Gabi1498g00002	662	FunFam	probable L-type lectin-domain containing receptor kinase S.5	412	620	-	-
	Gabi1498g00002	662	Gene3D	Transferase(Phosphotransferase) domain 1	412	619	-	-
	Gabi1498g00002	662	ProSiteProfiles	Protein kinase domain profile.	337	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1498g00002	662	SUPERFAMILY	Protein kinase-like (PK-like)	318	614	IPR011009	-
	Gabi1498g00002	662	PANTHER	-	59	621	-	-
	Gabi1498g00002	662	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	26	267	-	-
	Gabi1498g00002	662	Pfam	Legume lectin domain	29	267	IPR001220	GO:0030246
	Gabi1498g00002	662	SUPERFAMILY	Concanavalin A-like lectins/glucanases	25	259	IPR013320	-
	Gabi1498g00002	662	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	322	411	-	-
	Gabi1498g00002	662	CDD	STKc_IRAK	343	616	-	-
	Gabi1498g00002	662	Coils	Coil	567	587	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1498g00002	Gabi-Chr1498	71145	73133	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1498g00002	1	630	Receptor kinase-like Gene Family	AT5G55830	36.484	5.66e-123	379

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Gabi1498g00002		Pkinase	3e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1498g00002	-		-	gmx:100785031	1043.88