Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1494g00004 ATGGACCTCAAAACAAATCATACTCCTGTGCTTGCTGATACTGCACCATTAACACGGTCAAGGCTGGGGTCAACCATTCCGCATGGTTCCTTGCTGACAATTCCTAGGAAGAAAACAGGAATTCTTGATGATGTTCGTTCTAGTGGTTGGCTAGATGCCATGAAATCATCTTCTCCTACTCACAATAAAATATCAAAGGATGTTAGCCATGGGAATGCATCATCTGATGCTGATGCAGCCTATTATACTTGGCTGCTGAAGTTTCCATCAGCACTTACATCTTTTGAGCAAATTGCTAACTGTGCAAAAGGCAAGAGAATAGCATTGTTTCTGGATTATGATGGGACTCTTTCACCAATTGTGGATGATCCTGACTGTGCCTTCATGTCCGACAATATGCGTGCTGCTGTTAAAAAAGTGGCAGAATATTTTCCCACCGCAATAATTAGCGGAAGAAGCCGTGACAAGGTCTATGAATTTGTTGGAGTAACAGAACTCTATTATGCTGGTAGTCATGGGATGGACATTATGGGTCCTCTTAGACAATCTGTATCTGATAATCACCCAAATTGCATTATGTCTACTGACCATAAGGGTAATGAAGTCAATTTATTCCAACCCGCTGCTGCATTCCTGCCCATGATTGATGAGGTACATGGGTTGCTCATGGAGTGTACAAAAGACATTAAAGGAGCAAAAGTTGAGAACAATAAGTTTTGTGTCTCTGTACATTACCGTAATGTAGATGAGAAGATTTGGGATATGGTGGGACAACGTGTATATGATGTTCTGAAGGGCTACCCACGATTACGGATAACACATGGGCGGAGGGTTTTAGAGGTCCGACCCATGATTGACTGGGATAAGGGAAAAGCTATCACATTTTTACTTGAGTCACTTGGACTTAACAATTGTGATGACGTGCTAGCTATATATGTTGGAGATGATCGGACAGATGAAGATGCATTTAAGGTTTTGAGAGAAGTTAATAAAGGTTGTGGCATCTTAGTGTCCTCTGCCCCAAAGGAAAGCAATGCGGTTTACTCTCTTCGGGATCCTTTAGAGGTCATGGAATTTCTTAAGTCACTTGTGAAATGGAACAAAGCCTTGGGGAACACAAAAACATCACCAACTTTGAGAATCTTTTGGAAAAACTGGTTTTGGGTATCAACAAATCCAGCTAACAATACACCTTTGGTAACAAAGATCATCTCAGTAGCTCTAGGATGA 1230 0.4138 MDLKTNHTPVLADTAPLTRSRLGSTIPHGSLLTIPRKKTGILDDVRSSGWLDAMKSSSPTHNKISKDVSHGNASSDADAAYYTWLLKFPSALTSFEQIANCAKGKRIALFLDYDGTLSPIVDDPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVYEFVGVTELYYAGSHGMDIMGPLRQSVSDNHPNCIMSTDHKGNEVNLFQPAAAFLPMIDEVHGLLMECTKDIKGAKVENNKFCVSVHYRNVDEKIWDMVGQRVYDVLKGYPRLRITHGRRVLEVRPMIDWDKGKAITFLLESLGLNNCDDVLAIYVGDDRTDEDAFKVLREVNKGCGILVSSAPKESNAVYSLRDPLEVMEFLKSLVKWNKALGNTKTSPTLRIFWKNWFWVSTNPANNTPLVTKIISVALG 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1494g00004 409 FunFam Trehalose 6-phosphate phosphatase 214 373 - -
Gabi1494g00004 409 FunFam Trehalose 6-phosphate phosphatase 107 196 - -
Gabi1494g00004 409 CDD HAD_TPP 108 358 - -
Gabi1494g00004 409 NCBIfam HAD-IIB family hydrolase 109 327 IPR006379 -
Gabi1494g00004 409 Pfam Trehalose-phosphatase 110 353 IPR003337 GO:0003824|GO:0005992
Gabi1494g00004 409 NCBIfam trehalose-phosphatase 104 365 IPR003337 GO:0003824|GO:0005992
Gabi1494g00004 409 Gene3D - 107 191 IPR023214 -
Gabi1494g00004 409 Gene3D - 206 376 IPR023214 -
Gabi1494g00004 409 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 26 370 IPR044651 GO:0004805|GO:0005992
Gabi1494g00004 409 SUPERFAMILY HAD-like 108 366 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1494g00004 Gabi-Chr1494 69588 73167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1494g00004 103 363 Trehalose Biosynthesis Gene Families AT1G70290 26.619 2.65e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1494g00004 K01087 - gmx:100819495 620.542