Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1493g00010 ATGTCTGGAAAGGGGAAGAGGAAGGAGGAGCACGACGGTGCTTCCGACGGCGACTCCGAAGGTCACGCGCCTCCCAAGAAGTCCATCAAGAAAGATTCCGATGACGACCTTGACTCCATCGTCGTCTGCGAGATTTCGAAGAATCGGAGGGTTTCTGTGAGGAATTGGCAAGGCAGGACTATGGTCGATATTCGCGAATTTTACCTTAAAGATGGCAAGCAAATGCCTGGCAAAAAAGGTTTGGTTTTATAA 252 0.496 MSGKGKRKEEHDGASDGDSEGHAPPKKSIKKDSDDDLDSIVVCEISKNRRVSVRNWQGRTMVDIREFYLKDGKQMPGKKGLVL 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1493g00010 83 SUPERFAMILY ssDNA-binding transcriptional regulator domain 42 83 IPR009044 GO:0003677|GO:0006355
Gabi1493g00010 83 MobiDBLite consensus disorder prediction 1 36 - -
Gabi1493g00010 83 Pfam Transcriptional Coactivator p15 (PC4) 43 82 IPR003173 GO:0003677|GO:0006355
Gabi1493g00010 83 Gene3D Transcriptional Coactivator Pc4; Chain A 30 83 IPR009044 GO:0003677|GO:0006355
Gabi1493g00010 83 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 8 83 IPR045125 GO:0003713|GO:0060261
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1493g00010 Gabi-Chr1493 180281 180740 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Gabi1493g00010 PC4 6.9e-18 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1493g00010 K25815 - cit:102607972 124.02