Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1493g00009 ATGTCTGGAAAGGGGAAGAGGAAGGAGGAGCACGACGGTGCTTCCGACGGCGACTCCGAAGGTCACGCGCCTCCCAAGAAGTCCATCAAGAAAGATTCCGATGACGACCTTGACTCCATCGTCGTCTGCGAGATTTCGAAGAATCGGAGGGTTTCTGTGAGGAATTGGCAAGGCAGGACTATGGTCGATATTCGCGAATTTTACCTTAAAGATGGCAAGCAAATGCCTGGCAAAAAAGGTATCTCATTGACCATGGATCAGGTACATCTTGAAACTATATGGTTGTTGTATCTTTACAAGTTCCATTTCTATTCCATCTCAAATCTGTTGGTTGGTCTAAAGATCTAG 348 0.4626 MSGKGKRKEEHDGASDGDSEGHAPPKKSIKKDSDDDLDSIVVCEISKNRRVSVRNWQGRTMVDIREFYLKDGKQMPGKKGISLTMDQVHLETIWLLYLYKFHFYSISNLLVGLKI 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1493g00009 115 SUPERFAMILY ssDNA-binding transcriptional regulator domain 42 88 IPR009044 GO:0003677|GO:0006355
Gabi1493g00009 115 MobiDBLite consensus disorder prediction 1 36 - -
Gabi1493g00009 115 Pfam Transcriptional Coactivator p15 (PC4) 43 88 IPR003173 GO:0003677|GO:0006355
Gabi1493g00009 115 Gene3D Transcriptional Coactivator Pc4; Chain A 30 90 IPR009044 GO:0003677|GO:0006355
Gabi1493g00009 115 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 8 87 IPR045125 GO:0003713|GO:0060261
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1493g00009 Gabi-Chr1493 179300 180829 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Gabi1493g00009 PC4 1.4e-22 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1493g00009 K25815 - gmx:100820368 134.035