Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1492g00008 ATGCGGAGCCAAATTGTGTGCAATGGGTGTAGGAGCATCTTGGTTTACCCTAGAGGAGCTACCAATGTTTGCTGTGCATTGTGCAACACGATTACCTCTGTTCCTCCTCCTGGAATGGAAATGTCACAACTTTATTGTGGAGGCTGTAGGATATTGCTAATGTACACACGTGGAGCTACAAGTGTGAGATGTTCCTGCTGTCACACTGTAAACCTTGTACCAGAATCTAATCAAGTCAGCCATATCCATTGTGTGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTCCATCAGTCAAATGTGCAGTTTGTAACTATATTACTAATGTCAATATGACCAATGGAAGGCTTCCCATTCCTGGATCAAGACCTAATGGAACAACCAACTCTGGAACAGTATCTTCTGCTTCAACATCTCAGGGCCTAACTGTCGTAGTAGAAAATCCTATGTCTGTTGATTCAAGTGGGAAATTGGTGAGCAATGTTGTTGTGGGCGTTACAACAGATAAGAAGTGA 519 0.4335 MRSQIVCNGCRSILVYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRILLMYTRGATSVRCSCCHTVNLVPESNQVSHIHCVNCRTTLMYPYGAPSVKCAVCNYITNVNMTNGRLPIPGSRPNGTTNSGTVSSASTSQGLTVVVENPMSVDSSGKLVSNVVVGVTTDKK 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1492g00008 172 NCBIfam zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Gabi1492g00008 172 NCBIfam zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Gabi1492g00008 172 NCBIfam zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Gabi1492g00008 172 Pfam LSD1 zinc finger 7 31 IPR005735 -
Gabi1492g00008 172 Pfam LSD1 zinc finger 84 108 IPR005735 -
Gabi1492g00008 172 Pfam LSD1 zinc finger 46 70 IPR005735 -
Gabi1492g00008 172 PANTHER PROTEIN LSD1 3 171 IPR040319 -
Gabi1492g00008 172 MobiDBLite consensus disorder prediction 118 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1492g00008 Gabi-Chr1492 214273 223750 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Gabi1492g00008 zf-LSD1 2.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1492g00008 - K12191 gmx:100776394 310.457