Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi148g00001 ATGGCTGGAAGTGGAACTGGAGTGTTTGCTGAAACTTTGGATGGAGATGTGTATAAGTACTACTCTGATGGAGAATGGAAAAAATCTTCTGCAGGAAAAAGTGTTTCTATCATCAACCCCACTACCAGAAAGACTCAATATAAAGTTCAAGCTTGTTCGCAAGAAGAAGTTAATAAGGTAATGGATTCAGCAAAATCTGCACAAAAGTCATGGGCAAAGACCCCACTCTGGAAGCGGGCTGAACTTCTTCACAAGGCAGCTGCTATTCTCAAAGAACACAAAGATAAAATTGCAGAGTGCCTGGTGAAAGAAATAGCAAAGCCAGCCGAAGACGCAGTTACAGAGGTTGTAAGATCTGGGGATCTGATTTCTTACTGTGCTGAAGAAGGGGTAAGAATTCTGGGAGAGGGAAAGTTCTTAGTGTCAGACAGCTTTCCTGGAAATGAAAGAACAAAATATTGCCTTACAGCCAAGATTCCATTAGGAGTGATTTTAGCCATCCCACCTTTTAATTATCCTGTCAACCTTGCTGTCTCAAAAATTGCTCCTGCGCTGATAGCTGGGAACTCCATTGTGCTCAAGCCTCCAACTCAGGGAGCTGTTTCTGCTCTTCACATGGTGCATTGCTTTCACTTAGCTGGTTTTCCCAAAGGCCTAATAAGTTGTGTTACTGGCAAAGGCTCAGAAATTGGTGACTTCCTTACTATGCATCCAGGAGTGAACTGTATAAGCTTCACTGGTGGAGATACTGGTATTGCAATTTCAAAGAAAGCAAGCATGATTCCATTGCAAATGGAATTGGGAGGAAAGGATGCCTGCATTGTACTTGAGGATGCTGACCTAGATTTGGTGGCTGCAAACATTACAAAAGGAGGCTTTTCATACAGTGGTCAGAGGTGCACTGCTGTTAAGGTTGTTCTAGTGATGGAATCTGTTGCCGATGCATTGGTTGAGAAAGTGAAGGGTAGGGTGGCAAAGCTAAGTGTTGGGCCACCAGAAGATAACTCTGATATCACCCCAGTTGTTTCAGAATCATCAGCCAATTTCATTGAACGCCTGGTCATGGATGCAAAACAAAAAGGAGCAACATTCTGCCAGGAGTATAGAAGAGAAGGGAATCTCATTTGGCCTTTGCTCTTGGATAATGTTAGGCCTGATATGAGAATTGCATGGGAGGAACCTTTTGGACCAGTTTTGCCAGTTATAAGAATAAATTCTATTGAAGAAGGAATCCACCATTGTAATGCTAGCAATTTTGGACTTCAGGGTTGTGTCTTCACAAAGGATGTCAACAAAGCAATATTGATCAGTGATGCAATGGAGACAGGCACAGTTCAGATAAATTCTGCCCCAGCCCGTGGACCTGACCATTTTCCATTTCAGGGTATCAAGGATAGTGGAATTGGATCTCAAGGGATTACCAACAGCATAAACATGATGACCAAGGTCAAAACAACTGTGATCAACTTGCCCACACCTTCTTATACAATGGGCTAG 1497 0.4289 MAGSGTGVFAETLDGDVYKYYSDGEWKKSSAGKSVSIINPTTRKTQYKVQACSQEEVNKVMDSAKSAQKSWAKTPLWKRAELLHKAAAILKEHKDKIAECLVKEIAKPAEDAVTEVVRSGDLISYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTAKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKASMIPLQMELGGKDACIVLEDADLDLVAANITKGGFSYSGQRCTAVKVVLVMESVADALVEKVKGRVAKLSVGPPEDNSDITPVVSESSANFIERLVMDAKQKGATFCQEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSIEEGIHHCNASNFGLQGCVFTKDVNKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKVKTTVINLPTPSYTMG 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi148g00001 498 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 293 304 IPR016160 GO:0016491
Gabi148g00001 498 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 24 283 - -
Gabi148g00001 498 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 269 459 - -
Gabi148g00001 498 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 485 IPR016162 GO:0016491
Gabi148g00001 498 CDD ALDH_F11_NP-GAPDH 17 489 - -
Gabi148g00001 498 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 265 272 IPR029510 GO:0016491
Gabi148g00001 498 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 269 459 IPR016163 GO:0016620
Gabi148g00001 498 Pfam Aldehyde dehydrogenase family 26 485 IPR015590 GO:0016491
Gabi148g00001 498 PANTHER ALDEHYDE DEHYDROGENASE 6 497 - -
Gabi148g00001 498 SUPERFAMILY ALDH-like 17 489 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi148g00001 Gabi-Chr148 31144 35309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi148g00001 4 498 Aldehyde Dehydrogenase Gene Family AT2G24270 89.293 0.0 936
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi148g00001 K00131 - qsa:O6P43_003000 944.495