LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1489g00015	ATGCCAAAACTTCTTTCCGTTTCCAATGTCATCATCTTCTTCTTCTTCCTAATACTATGCTTTCTCAACAATGCTACAACAATCTTCGCTACCCAATTCGACTTTAACACCATAACACTGAGCACCCTCAAGCTTCTCGGCGATGCCCACATCAACAAAAACTCCGTCAGCCTCACCGGCGAACCCGCCGTCCCCAACTCCGCCTCCGGCAGAGCCCTTTACTCCAAACCCATCAGATTCCGGCAACCCGGAACCCCCATTCCGGCGAGCTTCGCCACCTCCTTCTCCTTCTCCGTCACCAACCTCAACCCTTCCTCCGTCGGCGGCGGACTCGCCTTCGTAATATCTCCGGTCGATGACGCCGTCGGAGACCCCGGAGGGTACCTCGGCCTGGGCGGCGGCGGCGGGTTCCTCGCAGTTGAGTTCGATACTCTCATGGACGTGGAGTTCAACGACATTAACGGTAACCATGTTGGGTTGGACCTTAACAGCGTGGTTTCAACGCAGGTTGGTGACTTGGGAACCCTCGCAATCGATTTGAAAAGCGGTGACTCGGTGAACGCGTGGATCGAGTTCGATGGAACCACCAAAGGGTTTTGCGTGTGGGTTTCGTACTCGAATGTGAAGCCTAAAGATCCGATTTTGAAGTTGGATCTTGATGTGGGTGAGTACGTGAATGAATGGATGTTCGTGGGTTTCTCTGGGTCTACACAGGGTAGCACAGAGGTTCACAATGTTGAGTGGTGGAGTTTTAACTCCACCTTTGATTCCACGGCGGCGGCGCTGCCTCCGCCGATACCTCCCAACCCAAATGCCACTTCACCATCACCTTCATTGGCTCCTGAAAAAGAGAGTAAATCTTCATGCCACAGTGGGTTATGTAAGCAAGGTATGGAAGCTGTTGCTGGGGTTGTAACTGCTGGTGCTTTTGTTATGGCTGTGTTTGTTGGTGCATTGATTTGGATGTACTCTAAGAAGGTTAAGCATGTGAAGAGATTTGATTCGTTTGAGTCGGGGATAATCAGAATGCCTAAAGAGTTCACCTACAAGGAGCTTAAATTGGCCACCAAGTGCTTCAGTGCTAATAGGATAATTGGTCACGGTGCGTTTGGGACGGTTTATAAGGGTGTATTCCCAGAGAATGGTGACATTGTTGCGGTGAAGAGGTGTAGCCATAGTGGTCAGGGTAAGAATGAGTTTATATCTGAATTGTCCATAATTGGAAGTCTTAGGCATCGAAACCTTGTTCGCCTTCAAGGTTGGTGCCATGAGAAAGGTGAGATTTTGTTGGTGTATGACTTAATGCCTAATGGGAGTTTAGATAAGGCTTTGTATGAGGCTAGAATGCCTTTATCATGGCCTCAAAGGCGCAAAATTTTGTTAGGTGTTGCATCTGTTTTGGCCTATTTGCATCATGAGTGTGAGAATCAGGTAATTCACAGGGACATTAAGACTAGTAACATAATGTTAGATGAAGGGTTCAATGCCCGGCTAGGTGATTTTGGTTTAGCGAGGCAAACGGAGCATGACAAGTCTCCTGATGCCACGGTGGCTGCCGGGACAATGGGGTACCTGGCGCCTGAGTATGTCCTTACAGGTAGAGCCACTGAGAAAACTGATGTGTTCAGTTATGGTGCTGTGGTTCTTGAGGTGGCAAGTGGGAGAAGACCTATAGAGAAAGATGCCAATGTGGTTGAGGTTAGCCGCAATTTGGTAGAATGGGTTTGGAGTTTGCACCAGGAAGGGAAGTTGCTAATGGCTGCTGATCCAAGGCTTGAGGGTGAGTTTGAGGAAGGGGAGATGAGGAGAGTACTCTTGGTTGGGCTAGCTTGCTCACACCCTGATTCAATGGCAAGACCTACTATGAGGGGTGTTATTCAGATGCTGCTGGGTGAGGCAGAAGTGCCAATTGTCCCTAGAACCAAGCCATCTACTAGTTATAGTACTTCCCACCTCTTAATGAGCTTGCAAGATAGTGAATCTGATTGTAATGGTAGAATCACCATCTCCACCTCCTCAGGAGAGAACAGCTTCAATGATAGAGATATTGTCTGA	2055	0.4861	MPKLLSVSNVIIFFFFLILCFLNNATTIFATQFDFNTITLSTLKLLGDAHINKNSVSLTGEPAVPNSASGRALYSKPIRFRQPGTPIPASFATSFSFSVTNLNPSSVGGGLAFVISPVDDAVGDPGGYLGLGGGGGFLAVEFDTLMDVEFNDINGNHVGLDLNSVVSTQVGDLGTLAIDLKSGDSVNAWIEFDGTTKGFCVWVSYSNVKPKDPILKLDLDVGEYVNEWMFVGFSGSTQGSTEVHNVEWWSFNSTFDSTAAALPPPIPPNPNATSPSPSLAPEKESKSSCHSGLCKQGMEAVAGVVTAGAFVMAVFVGALIWMYSKKVKHVKRFDSFESGIIRMPKEFTYKELKLATKCFSANRIIGHGAFGTVYKGVFPENGDIVAVKRCSHSGQGKNEFISELSIIGSLRHRNLVRLQGWCHEKGEILLVYDLMPNGSLDKALYEARMPLSWPQRRKILLGVASVLAYLHHECENQVIHRDIKTSNIMLDEGFNARLGDFGLARQTEHDKSPDATVAAGTMGYLAPEYVLTGRATEKTDVFSYGAVVLEVASGRRPIEKDANVVEVSRNLVEWVWSLHQEGKLLMAADPRLEGEFEEGEMRRVLLVGLACSHPDSMARPTMRGVIQMLLGEAEVPIVPRTKPSTSYSTSHLLMSLQDSESDCNGRITISTSSGENSFNDRDIV	684

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1489g00015	684	ProSiteProfiles	Protein kinase domain profile.	359	638	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1489g00015	684	FunFam	L-type lectin-domain containing receptor kinase VIII.1	435	647	-	-
	Gabi1489g00015	684	MobiDBLite	consensus disorder prediction	262	285	-	-
	Gabi1489g00015	684	Gene3D	Phosphorylase Kinase; domain 1	320	434	-	-
	Gabi1489g00015	684	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	478	490	IPR008271	GO:0004672\|GO:0006468
	Gabi1489g00015	684	Gene3D	-	29	262	-	-
	Gabi1489g00015	684	FunFam	L-type lectin-domain containing receptor kinase VIII.1	323	434	-	-
	Gabi1489g00015	684	SUPERFAMILY	Concanavalin A-like lectins/glucanases	29	257	IPR013320	-
	Gabi1489g00015	684	SUPERFAMILY	Protein kinase-like (PK-like)	341	662	IPR011009	-
	Gabi1489g00015	684	CDD	STKc_IRAK	365	629	-	-
	Gabi1489g00015	684	FunFam	L-type lectin-domain containing receptor kinase VIII.1	29	263	-	-
	Gabi1489g00015	684	ProSitePatterns	Protein kinases ATP-binding region signature.	365	388	IPR017441	GO:0005524
	Gabi1489g00015	684	Pfam	Protein kinase domain	361	579	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1489g00015	684	Gene3D	Transferase(Phosphotransferase) domain 1	435	636	-	-
	Gabi1489g00015	684	Pfam	Legume lectin domain	31	258	IPR001220	GO:0030246
	Gabi1489g00015	684	SMART	serkin_6	359	629	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1489g00015	684	PANTHER	-	48	639	-	-
	Gabi1489g00015	684	CDD	lectin_legume_LecRK_Arcelin_ConA	31	255	IPR001220	GO:0030246

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1489g00015	Gabi-Chr1489	231228	233436	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1489g00015	13	664	Receptor kinase-like Gene Family	AT3G53380	66.764	0.0	890

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Gabi1489g00015		Pkinase	1.3e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1489g00015	-		-	gmx:100815895	1032.71