Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1489g00013 ATGGTTCTCTCCAAGACAGTGTCTGAGACCGATGTCTCCGTCCACTCAACCTTTGCTTCACGCTATGTCAGGACTTCGCTTCCTAGGTTCAGGATGTCAGAGGAATCGATACCAAAGGAAGCAGCATACCAAATCATAAACGATGAGTTAATGCTGGATGGTAACCCAAGGCTGAACCTAGCATCGTTTGTGACCACTTGGATGGAACCTGAGTGTGATAAGCTCATCATGGCTTCCATTAACAAGAACTATGTTGACATGGATGAGTACCCTGTCACCACTGAGCTTCAGAATCGGTGTGTTAACATGATAGCTCATCTTTTTAATGCACCACTTCAAGAGTGTGAGACTGCAGTTGGTGTTGGCACTGTTGGTTCTTCAGAAGCCATAATGTTGGCTGGTTTGGCATTCAAAAGGAAGTGGCAGAATAGAAGGAAAAAAGAGGGAAAGCCTTATGACAATCCCAACATTGTTACTGGAGCCAATGTCCAGGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTGAAAGAGGTGAAGCTGCGTGATGGATACTATGTAATGGACCCTGAAAAGGCTGTGGAATTGGTGGATGAGAACACCATTTGTGTTGCTGCTATCCTTGGTTCCACCCTAAATGGAGAGTTTGAAGATGTCAAGCGCTTAAATGATCTCCTAATTGAAAAGAATAAGGAAACCGGATGGGACACTCCTATTCATGTGGATGCAGCCAGTGGTGGCTTCATTGCCCCATTTATATATCCAGAACTTGTGTGGGACTTCCGTTTACCACTAGTGAAGAGCATCAATGTTAGTGGCCACAAGTATGGTCTAGTCTATGCTGGAATTGGTTGGGTTATATGGAGAAGCAAGGAGGACTTGCCTGAGGAACTCATCTTCCACATCAATTATCTTGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGGTTCTAGCCAAGTCATTGCTCAGTACTACCAACTAATTCGCCTTGGTTATGAGGGATATAGAAATGTGATGGAAAATTGTAGGGACAACATGTTAGTACTTAAAGAGGGGCTCGAGAAAACAGGGCGCTTTGAAATTGTATCCAAAGACAATGGTGTGCCATTGGTGGCTTTCTCATTGAAGGACCACACTCACTATGATGAATTCCAAATCTCTGACTTGCTGAGGCGCTTTGGGTGGATAGTGCCAGCTTACACCATGCCTCCAGATGCTCAACATGTGACTGTGCTTCGTGTTGTCATCAGGGAGGACTTCTCAAGGACCCTTGCAGAGCGTCTTGTGGTTGATGTGGAGAAGGTGCTGCATGAGCTTGATTCACTTCCAGCTAGGGTGATGAGTAGCACCATGGTTGTGAAAAAGAGTGCTCTGGAGACACAAAGGGAAATCACTGCGGTTTGGAAGAAGTTTGTGTTGGAGAGGAAGAAGCTGAATGACAAGATGAATGGTGTTTGTTAA 1476 0.4519 MVLSKTVSETDVSVHSTFASRYVRTSLPRFRMSEESIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLQECETAVGVGTVGSSEAIMLAGLAFKRKWQNRRKKEGKPYDNPNIVTGANVQVCWEKFARYFEVELKEVKLRDGYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDVKRLNDLLIEKNKETGWDTPIHVDAASGGFIAPFIYPELVWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYRNVMENCRDNMLVLKEGLEKTGRFEIVSKDNGVPLVAFSLKDHTHYDEFQISDLLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVVDVEKVLHELDSLPARVMSSTMVVKKSALETQREITAVWKKFVLERKKLNDKMNGVC 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1489g00013 491 Pfam Pyridoxal-dependent decarboxylase conserved domain 38 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Gabi1489g00013 491 CDD DOPA_deC_like 59 439 - -
Gabi1489g00013 491 Gene3D - 1 65 - -
Gabi1489g00013 491 FunFam Glutamate decarboxylase 1 65 - -
Gabi1489g00013 491 Gene3D - 66 360 IPR015421 GO:0003824
Gabi1489g00013 491 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Gabi1489g00013 491 Gene3D - 361 448 - -
Gabi1489g00013 491 FunFam Glutamate decarboxylase 361 448 - -
Gabi1489g00013 491 PANTHER GLUTAMATE DECARBOXYLASE 1 481 IPR010107 GO:0004351|GO:0006536|GO:0030170
Gabi1489g00013 491 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Gabi1489g00013 491 FunFam Glutamate decarboxylase 66 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1489g00013 Gabi-Chr1489 221346 229873 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1489g00013 1 491 Calmodulin-binding Proteins AT5G17330 83.202 0.0 880
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1489g00013 K01580 - gmx:100796533 935.636