Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1489g00008 ATGTCCACCCACGATTCCTTCTCGGATCACAAGCTCTGCGGTTTCCTCTGTGCGGTTCTCACAGTTACTCAGCCGCAGCGCGAGAATACCTCAGGTTTCAATGAACGCTGCGAAATCTACGGCGAGGGCGCTGCTGAGGTCGGGTTCCGGTCCCTGGGCGGCGTCGTTTTGGGTACGGTAGAATGTGGGAGCTCGAAGGTGAGGAGGATGAAGAAGATTGGGATGGTGAATGGGAGTGTGAGCGTTGTTCATCAGCTTCACGCTTTGGTTAGCCGCAATTGCATGAAGATTGATGCTCGAGTGGTGTTGGTTGAGCCTGATGTGGCTAGGATGGTTGTGCTGGTTGATGTTTATGTCCCAATTCAGTTGTGGAGTGGCTGGCAGTTCCCGAAATCGGGTTCCGTCGCCGGTGCTGTTTTTCGCCATTTGAGCTGTGATTGGGATGAGAGATGTTCAATGCTTTCTTGTCCAGACTATTGTAGGAAGACTCGCGTAGCAAATGAGAGCATTTGGGACCTTTCTGATTGTCATGTACTTGGTTGCAAGCTCCATTCCTGTGTGAGTGATTCTTCAAGGGAAAAGCTATTTGAACTTCATGAAATTTTTAAAACGGTACCTGGTGTAGGAAAACAGCAGAAGTTTAATAGTTCCAAGATAATACCTATGGATAACACTTGCAGATCTGGGATTTGGGAGATATCTGATGATATTTTAACTACAATTCTAGCTTTCTTGGGCCCAATGGACCTTGCTAGGGTTTCTGCAACATGTCATCATCTAAGATCCTTGGCTGCTTCAGTAATGCCTTGTACTAAGTTAAAGCTGTTTCCTCATCAGCAGGCAGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATGCTGAAATTTTGCCACATCCTTTATATGTATCTCTCTCAACTGATGATGGCTTTAGTTTCCACATAAATACTGTATCTGGTAAAATAGTCACTGGGGAAGCTCCCACCATCAAAGATTTTCGTGGAGGAATGTTTTGTGATGAACCTGGCTTGGGTAAGACTGTAACAGCTCTTACTCTTATTGTGAAGACGCAAGGTACATTGCCAGATCCACCAGATGAGGCACAAGTAGTCTGGTGTCAACATAATGGTAACCATAAATGTGGCTATTATGAGATCAGTGGAAATAACATCTCTGGTTGTAGTATTTTGGGTAAGAGGGATGTGTGCCAAGATGGTAGTAGAAATAATGCGAACGATGATTACTCCTCCAAAAGAATCAGATTGGTGGATCCTGATCAGCAAATCACTAAACTTCATGGTTCATGTTCTGGGAAAGAAAAATCACCTGTCGATGCATGCTTTAAGGAATCTATGCCTGCAAATCGGTGCACTAGAAGCTTGAGTCGCATAAAGAGAAATCTACATTTCTCATATGAAGAAGAAGCTATGATTTTCAAAAAAAGAAAAGTTGGTGAAAGATCAATTAAAACAAAGCACACATCAGATGTTGCATCACATGTATCTCAAAACAAGCTAGTTGATACTTCAGATGGATGTGGACAAAGTTACAAGTGTCCTGGGAAGCCTAAAGATGACTGTTTGGAGTACCGTGATACATGGATTCAGTGTGATGCATGTCACAAGTGGCGTAAGCTTGCAGACAATAGCACGGCTAATTCTAGTGCGGCATGGTTTTGTAGTATGAACGCTGACCCTTTTTATCAAAGTTGTAATGTCCCAGAACAAAATTTTCAGAATAGCTGTAAGATAACTTACTTGCCAGGATTTCACTTGAAAGGAACTCCTGGGGGTGAGAAAGAAAATGTTTCATTTTTCACTAGTGTACTTAAGGAGCACTACTCATTGATAAATTCTCAGACAAAGAAGGCCCTGACTTGGTTGGCTAAAATTTCGACGGACAAGCTTGCAGGAATGGAAACAAATGGCATACAGGGTCCTATTTTAAACATTTGCACTAATGGATATTTTAATGCATTCCACAAAATATTTCAAGCATTTGGCCTTTTAAAGAAAGTAGAGAAAGGTGTATGCAGGTGGTACTACCCACAAAATCTTAACAATTTGACTTTTGATGTGGCTGCCCTTGGCTTGGCTCTTTGTGAGCCATTAGATTTTGTTAGGTTATACTTGTCAAGAGCAACCCTGGTAGTTGTTCCAGCAAACTTGGTTGATCATTGGAAAACACAAATAGAAAAGCATGTCAGACCTGGTCAATTACGGGTTTATGTTTGGACTGATCATCGGAAGCCATCTGCACACTGTCTCGCTTGGGATTATGATGTTGTCATCACTACATTTAGTCGTTTGAGTGCAGAGTGGAGCCCACATAAGAGGAGTGTTTTGATGCAAGTGCATTGGTTTAGGATAATTTTAGATGAAGGGCACACTCTTGGCTCAAGCCTGAATTTAACAAACAAGTTGCAAATGGCTATTTCATTGATGGCTTCGAATCGATGGATACTAACTGGAACTCCAACACCTAACACTCCTAACAGCCAACTTCCACATCTACAACCATTGCTAAGGTTCCTTCATGAGGAAGCTTATGGACTGAATCAAAAATCATGGGAAGCTGGCATGCTTAGGCCATTTGAAGCAGAGATGGAGGAAGGAAGATCTCGTCTATTGAATTTACTTCACAAATGTACAATTAGTGCAAGAAAAATAGATTTGCAGAGCATTCCACCGTGCATCAAGAAAGTTGTTTTTGTAGACTTCAATGAGGAGCACGCTAGAAGCTACAATGAATTAGTTCTCACTGTCCGTCGTAATATATTGATGGCTGATTGGAATGATCCTTCACATGTTGAGAGTCTACTGAATCCAAAACAGTGGAAATTTCGTGGTGCAACAACAAAAAATGTCAGGCTTTCATGTTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAAGAAACAATGGATATGTTAGTACAAAATGGTCTAGATCCTACTTCAGGAGAGTATACCTCCATAAGATATAATCTCCTATATGGTGGTTACTGTGTCAGGTGTAAGGAATGGTGCCGCCTTCCTCTCATTACACCATGTCGGCATCTGTTGTGCCTTGATTGTATTTCTATAGATAATACAAAGTGTACTTATCCTGGCTGCGGTAAATTATATGAGATGGAGAGTCCTCTTGCCCGACCAGAAAATCCTAACCCAAAGTGGCCTGTACCCAAAGATCTTATTGAGCTGCAACCTTCATATAAGCAGGATAAGTGGGATCCTGATTGGCAATCAACATCTAGTAGTAAAGTGTCCTATCTTGTCCAGAGGTTGAAAGCTTTGCAAGAATCCAACGAAGAGACGAGTTTCTATAGAGACAATAGCAATGATGAGATGCATAACGATAATAGTTTCCCTTTGCATATGAGAGATGCCAAATCATCATTCCAAGAATGTTCTATAAGAAGCACTGAATCCAATTTGAACCCTGAGAAAGTTCTGATATTTTCTCAATTTCTTGAGCATATAAATGTCATTGAACAGCAGTTGGCTATTGCTGGTATCAAATATACTGGGATGTATAGCCCAATGCATTCCTGCAACAAGAAGAAGTCATTAGCCATGTTCCAGCATGATTCAAGTTGTATGGCACTTGTCATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTCACGCGTGTATTTTTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCCCATCGCATGGGTGCTTCGCGTCCCATCCACGTGGAAACATTAGCAATGCGCGGCACAATTGAAGAGCAAATGCTAGAATTTTTACAGGATGCTGATAAATGTAGAAGATTTCCAAGTAAAGATGTTGCCAAATCTGAAGATGATGGTGGAGGACGAGGATATCGATCATTGCATGATTTTGCTGAAAGCAGTTATCTACTGAAACTTAGATTTGTTTATACTAATTTGGAAACTCTCGAAGGCGTTTGA 3978 0.416 MSTHDSFSDHKLCGFLCAVLTVTQPQRENTSGFNERCEIYGEGAAEVGFRSLGGVVLGTVECGSSKVRRMKKIGMVNGSVSVVHQLHALVSRNCMKIDARVVLVEPDVARMVVLVDVYVPIQLWSGWQFPKSGSVAGAVFRHLSCDWDERCSMLSCPDYCRKTRVANESIWDLSDCHVLGCKLHSCVSDSSREKLFELHEIFKTVPGVGKQQKFNSSKIIPMDNTCRSGIWEISDDILTTILAFLGPMDLARVSATCHHLRSLAASVMPCTKLKLFPHQQAAVEWMLHRERNAEILPHPLYVSLSTDDGFSFHINTVSGKIVTGEAPTIKDFRGGMFCDEPGLGKTVTALTLIVKTQGTLPDPPDEAQVVWCQHNGNHKCGYYEISGNNISGCSILGKRDVCQDGSRNNANDDYSSKRIRLVDPDQQITKLHGSCSGKEKSPVDACFKESMPANRCTRSLSRIKRNLHFSYEEEAMIFKKRKVGERSIKTKHTSDVASHVSQNKLVDTSDGCGQSYKCPGKPKDDCLEYRDTWIQCDACHKWRKLADNSTANSSAAWFCSMNADPFYQSCNVPEQNFQNSCKITYLPGFHLKGTPGGEKENVSFFTSVLKEHYSLINSQTKKALTWLAKISTDKLAGMETNGIQGPILNICTNGYFNAFHKIFQAFGLLKKVEKGVCRWYYPQNLNNLTFDVAALGLALCEPLDFVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLRVYVWTDHRKPSAHCLAWDYDVVITTFSRLSAEWSPHKRSVLMQVHWFRIILDEGHTLGSSLNLTNKLQMAISLMASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEEAYGLNQKSWEAGMLRPFEAEMEEGRSRLLNLLHKCTISARKIDLQSIPPCIKKVVFVDFNEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRGATTKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQNGLDPTSGEYTSIRYNLLYGGYCVRCKEWCRLPLITPCRHLLCLDCISIDNTKCTYPGCGKLYEMESPLARPENPNPKWPVPKDLIELQPSYKQDKWDPDWQSTSSSKVSYLVQRLKALQESNEETSFYRDNSNDEMHNDNSFPLHMRDAKSSFQECSIRSTESNLNPEKVLIFSQFLEHINVIEQQLAIAGIKYTGMYSPMHSCNKKKSLAMFQHDSSCMALVMDGSAALGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLEFLQDADKCRRFPSKDVAKSEDDGGGRGYRSLHDFAESSYLLKLRFVYTNLETLEGV 1325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1489g00008 1325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 357 IPR027417 -
Gabi1489g00008 1325 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 678 843 IPR014001 -
Gabi1489g00008 1325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 1275 IPR027417 -
Gabi1489g00008 1325 SMART ultradead3 271 854 IPR014001 -
Gabi1489g00008 1325 Pfam CW-type Zinc Finger 532 575 IPR011124 GO:0008270
Gabi1489g00008 1325 CDD F-box_SF 232 264 - -
Gabi1489g00008 1325 CDD DEXDc_SHPRH-like 707 884 - -
Gabi1489g00008 1325 SUPERFAMILY F-box domain 224 266 IPR036047 GO:0005515
Gabi1489g00008 1325 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 114 1272 - -
Gabi1489g00008 1325 SUPERFAMILY RING/U-box 995 1045 - -
Gabi1489g00008 1325 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1141 1286 IPR001650 -
Gabi1489g00008 1325 Pfam SNF2-related domain 278 941 IPR000330 GO:0005524|GO:0140658
Gabi1489g00008 1325 CDD SF2_C_SNF 1150 1257 - -
Gabi1489g00008 1325 ProSitePatterns Zinc finger RING-type signature. 1021 1030 IPR017907 -
Gabi1489g00008 1325 Gene3D - 696 887 IPR038718 -
Gabi1489g00008 1325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 711 875 IPR027417 -
Gabi1489g00008 1325 SMART helicmild6 1165 1247 IPR001650 -
Gabi1489g00008 1325 SMART fbox_2 233 273 IPR001810 GO:0005515
Gabi1489g00008 1325 Gene3D - 1064 1291 IPR027417 -
Gabi1489g00008 1325 Gene3D - 526 577 - -
Gabi1489g00008 1325 ProSiteProfiles Zinc finger CW-type profile. 527 578 IPR011124 GO:0008270
Gabi1489g00008 1325 Pfam Helicase conserved C-terminal domain 1146 1247 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1489g00008 Gabi-Chr1489 95986 105869 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1489g00008 713 1267 RAD5 or RAD16-like Gene Family AT5G22750 24.874 6.75e-41 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi1489g00008 SNF2_N 1.4e-96 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1489g00008 - - gmx:100803102 2234.91