Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1488g00021 ATGGACTTTGGAAGGGTGGGACCCTCCGAACCAGGTGGCTCATCACGGCGCTCCACCGCTCCTCTCACAGGACCAATCTCCTCCTCTTCCTCAAAAAGTAAAAAGAAGCTCATCATGCTCTCCATCCTCGCCGCCGTCTTAATTGTCGCCTCCGCAATCTCCGCCGCGCTCGTCACCGTAATCCGCTCCCGCGCTTCAGCTAAAAATCAAAACCCACCGAATCTCATTGGCAAACCAACGCAGGCAATTTCCCGAACCTGCAGCAAGACACTGTTCCCTACACTCTGCATCAACTCTCTCCTCGATTTCCCAGGCTCCACCACAGCTTCGGAGCAGGACCTCATTCACATCTCCTTTAACATGACCCTGAGCCACGTCAGCACAGCATTATACGACTCCACCGGCATCTCCTACGCCGCCACGGATCCGCTGCTGCGCACCGCCTACGATGACTGCCTCGAGCTCCTCGAGGAGTCCATGGACGCGCTCTCAAGATCCCTCACCTCCGTCGTGCAGCCTTCAGCCGCCGCCGCCGCTGGATCCAACGACGACGTGCTGACGTGGCTCAGCACCGCGCTCACTAATCAGGACACGTGTGCGGAGGGCTTGGAAGACTCAAGCGGGAGCGTTAAGGATCAGATGGTTAATAATTTGAAGGACTTGTCGGAACTCGTGAGTAACTCTCTCGCGATATTCTCGGCTAGCGACAATGGTGACTTCTCAGGGGTCCCCATACAGAACAGGAGACGATTAATGAGAATGGAAGAGGACGAGGGAGAGAATTTTAATGGATATATATCGGGGAAATTTCCGAGATGGTTGAATAAACGAGATAGGAGATTGTTGAGTTTACCCATATCGGCATTACAAGCCGATATAATAGTGTCCAAGAATGGGAACGGAACAGTGAAGACAATCTCAGAGGCAATTAAGAAGGCACCAGAGCATAGTAATCGCCGGCTCATAATCTACGTGAGGGCAGGAAGGTATGAAGAGAATAATTTAAAGGTAGGGAGAAAGAAAACCAATCTCATGTTCATAGGGGACGGGAAGGGCAAAACTGTCATCACAGGGAGAAAAAATGTTAAGGATGGCATGACCACATTCCATACCGCATCCTTCGCTGCTAGTGGTGCTGGTTTCATTGCACGAGACATAACGTTCGAGAACTACGCCGGACCAGAGAAGCACCAAGCGGTGGCACTCCGTGTCGGAGCTGACCACGCGGTGGTGTACAGATGCGACGTCGTTGGGTACCAAGACTCATGCTATGTGCACTCCAACCGTCAATTCTTCCGTGAATGTGACATTTACGGCACCGTTGACTTCATATTCGGTAACGCTGCCGTGGTTTTCCAAAAGTGCAACCTTTATTCTCGGAAGCCCATGGCCCAACAGAAGAACACCATCACGGCCCAAAATAGGAAAGACCCGAATCAAAATACGGGTATATCCATCCACAACTGTCGGATCCTACCCGCCCCGGATCTCACCGCCGTGAAAGACGGCATCTCCACCTATCTGGGCCGTCCATGGAAACAATACTCTAGAACCGTGTACATGTTATCATACATGAGTGATCACATTGATCCTAGTGGATGGCTAGAATGGAATGGAGACTTTGCTTTAGACACATTGTATTATGGCGAGTACATGAATTATGGGCCGGGTGCAGCCATCGGGCAACGGGTTAAATGGCCCGGGTACCGGGTCATTACTTCTACGGTGGAGGCAAACAGATTCACGGTGGCCCAATTCATATCCGGGTCGGCGTGGATACCGTCCACCGGAGTGGCGTTCTTGGCTGGACTATCCACCTGA 1821 0.5195 MDFGRVGPSEPGGSSRRSTAPLTGPISSSSSKSKKKLIMLSILAAVLIVASAISAALVTVIRSRASAKNQNPPNLIGKPTQAISRTCSKTLFPTLCINSLLDFPGSTTASEQDLIHISFNMTLSHVSTALYDSTGISYAATDPLLRTAYDDCLELLEESMDALSRSLTSVVQPSAAAAAGSNDDVLTWLSTALTNQDTCAEGLEDSSGSVKDQMVNNLKDLSELVSNSLAIFSASDNGDFSGVPIQNRRRLMRMEEDEGENFNGYISGKFPRWLNKRDRRLLSLPISALQADIIVSKNGNGTVKTISEAIKKAPEHSNRRLIIYVRAGRYEENNLKVGRKKTNLMFIGDGKGKTVITGRKNVKDGMTTFHTASFAASGAGFIARDITFENYAGPEKHQAVALRVGADHAVVYRCDVVGYQDSCYVHSNRQFFRECDIYGTVDFIFGNAAVVFQKCNLYSRKPMAQQKNTITAQNRKDPNQNTGISIHNCRILPAPDLTAVKDGISTYLGRPWKQYSRTVYMLSYMSDHIDPSGWLEWNGDFALDTLYYGEYMNYGPGAAIGQRVKWPGYRVITSTVEANRFTVAQFISGSAWIPSTGVAFLAGLST 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1488g00021 606 FunFam Pectinesterase 286 604 - -
Gabi1488g00021 606 MobiDBLite consensus disorder prediction 12 30 - -
Gabi1488g00021 606 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 81 233 IPR035513 -
Gabi1488g00021 606 Gene3D - 286 604 IPR012334 -
Gabi1488g00021 606 NCBIfam pectinesterase inhibitor domain 70 232 IPR006501 GO:0004857
Gabi1488g00021 606 SUPERFAMILY Pectin lyase-like 287 603 IPR011050 -
Gabi1488g00021 606 Pfam Plant invertase/pectin methylesterase inhibitor 82 231 IPR006501 GO:0004857
Gabi1488g00021 606 Pfam Pectinesterase 292 589 IPR000070 GO:0030599|GO:0042545
Gabi1488g00021 606 Gene3D Invertase/pectin methylesterase inhibitor family protein 79 234 IPR035513 -
Gabi1488g00021 606 SMART PMEI_2 78 231 IPR006501 GO:0004857
Gabi1488g00021 606 ProSitePatterns Pectinesterase signature 2. 437 446 IPR033131 -
Gabi1488g00021 606 FunFam Pectinesterase 79 235 - -
Gabi1488g00021 606 MobiDBLite consensus disorder prediction 1 30 - -
Gabi1488g00021 606 CDD PMEI-like_3 87 234 - -
Gabi1488g00021 606 PANTHER PECTINESTERASE 49 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1488g00021 Gabi-Chr1488 227608 231742 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1488g00021 1 605 Carbohydrate Esterase AT5G53370 63.980 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1488g00021 - - gmx:106796002 964.911