Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1488g00014 ATGCTCTCCATCCTCGCCGCCGTCTTAATTGTCGCCTCCGCAATCTCCGCCGCGCTCGTCACCGTAATCCGCTCCCGCGCTTCAGCTAAAAATCAAAACCCACCGAATCTCATTGGCAAACCAACGCAGGCAATTTCCCGAACCTGCAGCAAGACACTGTTCCCTACACTCTGCATCAACTCTCTCCTCGATTTCCCAGGCTCCACCACAGCTTCGGAGCAGGACCTCATTCACATCTCCTTTAACATGACCCTGAGCCACGTCAGCACAGCATTATACGACTCCACCGGCATCTCCTACGCCGCCACGGATCCGCTGCTGCGCACCGCCTACGATGACTGCCTCGAGCTCCTCGAGGAGTCCATGGACGCGCTCTCAAGATCCCTCACCTCCGTCGTGCAGCCTTCAGCCGCCGCCGCCGCTGGATCCAACGACGACGTGCTGACGTGGCTCAGCACCGCGCTCACTAATCAGGACACGTGTGCGGAGGGCTTGGAAGACTCAAGCGGGAGCGTTAAGGATCAGATGGTTAATAATTTGAAGGACTTGTCGGAACTCGTGAGTAACTCTCTCGCGATATTCTCGGCTAGCGACAATGGTGACTTCTCAGGGGTCCCCATACAGAACAGGAGACGATTAATGAGAATGGAAGAGGACGAGGGAGAGAATTTTAATGGATATATATCGGGGAAATTTCCGAGATGGTTGAATAAACGAGATAGGAGATTGTTGAGTTTACCCATATCGGCATTACAAGCCGATATAATAGTGTCCAAGAATGGGAACGGAACAGTGAAGACAATCTCAGAGGCAATTAAGAAGGCACCAGAGCATAGTAATCGCCGGCTCATAATCTACGTGAGGGCAGGAAGGTATGAAGAGAATAATTTAAAGGTAGGGAGAAAGAAAACCAATCTCATGTTCATAGGGGACGGGAAGGGCAAAACTGTCATCACAGGGAGAAAAAATGTTAAGGATGGCATGACCACATTCCATACCGCATCCTTCGCTGCTAGTGGTGCTGGTTTCATTGCACGAGACATAACGTTCGAGAACTACGCCGGACCAGAGAAGCACCAAGCGGTGGCACTCCGTGTCGGAGCTGACCACGCGGTGGTGTACAGATGCGACGTCGTTGGGTACCAAGACTCATGCTATGTGCACTCCAACCGTCAATTCTTCCGTGAATGTGACATTTACGGCACCGTTGACTTCATATTCGGTAACGCTGCCGTGGTTTTCCAAAAGTGCAACCTTTATTCTCGGAAGCCCATGGCCCAACAGAAGAACACCATCACGGCCCAAAATAGGAAAGACCCGAATCAAAATACGGGTATATCCATCCACAACTGTCGGATCCTACCCGCCCCGGATCTCACCGCCGTGAAAGACGGCATCTCCACCTATCTGGGCCGTCCATGGAAACAATACTCTAGAACCGTGTACATGTTATCATACATGAGTGATCACATTGATCCTAGTGGATGGCTAGAATGGAATGGAGACTTTGCTTTAGACACATTGTATTATGGCGAGTACATGAATTATGGGCCGGGTGCAGCCATCGGGCAACGGGTTAAATGGCCCGGGTACCGGGTCATTACTTCTACGGTGGAGGCAAACAGATTCACGGTGGCCCAATTCATATCCGGGTCGGCGTGGATACCGTCCACCGGAGTGGCGTTCTTGGCTGGACTATCCACCTGA 1707 0.5179 MLSILAAVLIVASAISAALVTVIRSRASAKNQNPPNLIGKPTQAISRTCSKTLFPTLCINSLLDFPGSTTASEQDLIHISFNMTLSHVSTALYDSTGISYAATDPLLRTAYDDCLELLEESMDALSRSLTSVVQPSAAAAAGSNDDVLTWLSTALTNQDTCAEGLEDSSGSVKDQMVNNLKDLSELVSNSLAIFSASDNGDFSGVPIQNRRRLMRMEEDEGENFNGYISGKFPRWLNKRDRRLLSLPISALQADIIVSKNGNGTVKTISEAIKKAPEHSNRRLIIYVRAGRYEENNLKVGRKKTNLMFIGDGKGKTVITGRKNVKDGMTTFHTASFAASGAGFIARDITFENYAGPEKHQAVALRVGADHAVVYRCDVVGYQDSCYVHSNRQFFRECDIYGTVDFIFGNAAVVFQKCNLYSRKPMAQQKNTITAQNRKDPNQNTGISIHNCRILPAPDLTAVKDGISTYLGRPWKQYSRTVYMLSYMSDHIDPSGWLEWNGDFALDTLYYGEYMNYGPGAAIGQRVKWPGYRVITSTVEANRFTVAQFISGSAWIPSTGVAFLAGLST 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1488g00014 568 Pfam Plant invertase/pectin methylesterase inhibitor 44 193 IPR006501 GO:0004857
Gabi1488g00014 568 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Gabi1488g00014 568 CDD PMEI-like_3 49 196 - -
Gabi1488g00014 568 PANTHER PECTINESTERASE 14 556 - -
Gabi1488g00014 568 NCBIfam pectinesterase inhibitor domain 32 194 IPR006501 GO:0004857
Gabi1488g00014 568 FunFam Pectinesterase 41 197 - -
Gabi1488g00014 568 FunFam Pectinesterase 248 566 - -
Gabi1488g00014 568 SMART PMEI_2 40 193 IPR006501 GO:0004857
Gabi1488g00014 568 Pfam Pectinesterase 254 551 IPR000070 GO:0030599|GO:0042545
Gabi1488g00014 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 195 IPR035513 -
Gabi1488g00014 568 Gene3D - 248 566 IPR012334 -
Gabi1488g00014 568 SUPERFAMILY Pectin lyase-like 249 565 IPR011050 -
Gabi1488g00014 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 196 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1488g00014 Gabi-Chr1488 168628 231742 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1488g00014 2 567 Carbohydrate Esterase AT5G53370 65.905 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1488g00014 - - gmx:106796002 938.717