Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1488g00012 ATGATAATCAAGCGGAACCTGAAATCCCAAATGCCGAGTCAGAAGCGGTGCAGACTCGGTGCCTCGGCGGTTGAGGATGACGAGTGCGCGGCAGAAACTCGGAAGAGGAAGAAGAAGAAGACCAATGAGCACTACCCTCTGAATCTCCTCGCCGGCGTAATTCCCATGAGCTTCCGCGGCTTACTCGGCGCCGGCGGTGGAGTTTCTGAGAAGGTCGAAATTGAATCGAACTCGAAGGGGGGCGGCGGCAACGGCGGCGAAGGAGTCAAGAAGAATGCTACGCGGCCGCCGCTGGTGCGGACTTCGCGGGGCCGAGTACAGGTGCTTCCTTCGAGGTTCAATGATTCGGTTATTGAGGATTGGAGAAAGGATAGCAACAAGGGTGCTACTAGCTTGCCTGATTATGAATTTGAGTGTGGGAAGAAGTTGAATTTCAGGGCAACGAAAAATTCTAACCATGGTGCGAGGAAAGGGAAGAACGGTCACAAGCCTCCCACATTGTGTGAGGAGGTGCTGCTTAAGAATTTTGACGCCAAGCGTGGTAAGGTGTTTGTTGAAGATGTTGTGGGGTTTGTGGAATTAACGGGTGATGAGAGAGTTTTGAAGGAGAAGAAGAAGAAAGATGGGTTGTATGGACCAGAAGACTTTTATGCAGGTGATATAGTGTGGGCCAAAGCAAGGAAGAAGGAACCTTTTTGGCCTGCCATTGTTATTGATCCTATTTGTCAGGCACCTGAGCTGGTCTTGAAGTCTTGTATAGCTGATGCAGCTTGCGTGATGTTTCTTGGGTACTCTGAGAATGAAAATCATAGGGACTATGCGTGGGTAGAGTATGGGATGATTTTTCCATTTATGGAATATGTAGACAGGTTCCAGAGGCAGTCTGAATTGAGTAGCTGTAAATCCTCCGAATTTCAAAAGGCAATAGAGGAGGCATTTTTGGCAGATCAGGGCTTTACAGAGAAGTTGATAGCAGATATAAATACAGCCGCTTGTAACAATGGTTACAGTGATTCTATTTTGAAAGGCTTCCGTGAGGTTGATGGTTCAAACCAGAATGAAGGATGCCACTTTCTGAGCCAGGATTTATTTGATAAGAAGAAAGACAACCGACCCTGTGAAGTATGTGGATTGGACCTTCCTTTCAAAACGCCAAAGAAAACAAAGGATTTGAATCCTGGCAGCCAATTCCTATGTAAAACATGTGCTAGGTTAACAAAATCTAAACATTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCAGATAGTGGAAGCTGGGTGCGCTGCGATGGATGTAAAGTGTGGGTGCATGCAGAATGCGACAAAATCTCCAGCAATCTTTTCAAGAATCTTGGAGGCACTGATTATTTCTGCCCTACTTGCAAAGTGAAGTTTAATTTTGAGTTATCTGATTCAGAAAAATCACAGCCAAAAGTCAAATGGAACAAAAACAGTGGGCAGCTAGTGCTTCCAAACAAGGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTCCCAAGCCTTCACTTAGTTGTGTGCAAGTGTGGTTTTTGTGAGACTGAAAAGCAAGCTCTTCCTGAGTGGGAACGCCATACAGGTTCCAAATTTAGAAATTGGAGAACAAGTATTCGGGTGAAAGGATCCATGCTATCACTGGAACAATGGATGCTGCAATTGGCAGAGTTTCATGCTAAAGCTGTAGTTTCTATCAAACCTAAAAAACCTTCCTTAAAAGAAAGGAAGCAGAAGTTGCTTACCTTTTTGCAAGAAAAGTATGAACCTGTTTGTGCTAAGTGGACTACAGAACGATGTGCTGTATGTAGATGGGTTGAAGATTGGGACTACAACAAAATTATCATTTGCAACAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGGAATGTTCGAGACTTTACGTCATGGGTTTGTAAAGCTTGTGAAACACCTGACATCAAGCGGGAGTGTTGTCTTTGCCCTGTAAAAGGTGGTGCTCTAAAGCCAACTGATGTTGACACATTATGGGTTCATGTCACTTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTGAGCATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGTAAGCAAATTCATGGTTCGTGCACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCATCAAGGGCCGGTTATCGCATGGAGTTGCATTGTTCGGAGAAAAATGGTAAACAGACAACAAGAATGATTTCTTATTGTGCTTACCACAGGGCTCCCAATCCAGACACTGTTTTGATTATGCAAACCCCTCTTGGTGTAATTTCAACCAAAAGCCTTCTCCAAACTAAGAAAAAAGCTGGGTCAAGGTTAATTTCATCTAACAGAGCAAAGGTAGAAGACATTCCTCCTGCAGATAACACTGGACACGAGCCATTCTCTGCTGCTAGGTGTCGTATCTTTCAAAGAACAAACCATACAAAAAAGAGAGCAGCAGATGAAGCCATTGCTCATCAAGTGAGGGGTCACTACCATCATCCTTTAGATGCAATACATAGTTTAAATGCATACAGAGCGGTAAATGAACCTCAGGCATTTTCTTCTTTCAAGGAACGCCTTTGCTACTTACAGAGAACTGAAAACGAACGGGTTTGCTTTGGTAGATCGGGCATACATGGATGGGGCCTCTTTGCACGTAGAAATATTCAAGAAGGAGAAATGCAGGTTCTTGAATATCGTGGTGAACAAGTGAGGCGCAGCATTGCAGATCTAAGGGAGGCACGCTATAGATTAGAAGGGAAAGACTGCTATCTGTTCAAGATAAGTGAAGAAGTGGTAGTAGATGCCACTGATAAAGGAAATATAGCGCGGCTGATTAACCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTGGGTGATGACGAGAGCCGGATTGCACTCATTGCTAAGACTAACGTATCTGCTGGCGATGAGCTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTTAAAGTCCCTTGTTTATGTAAAGCTCCAAACTGCCGGAAATTCATGAATTAG 3120 0.4375 MIIKRNLKSQMPSQKRCRLGASAVEDDECAAETRKRKKKKTNEHYPLNLLAGVIPMSFRGLLGAGGGVSEKVEIESNSKGGGGNGGEGVKKNATRPPLVRTSRGRVQVLPSRFNDSVIEDWRKDSNKGATSLPDYEFECGKKLNFRATKNSNHGARKGKNGHKPPTLCEEVLLKNFDAKRGKVFVEDVVGFVELTGDERVLKEKKKKDGLYGPEDFYAGDIVWAKARKKEPFWPAIVIDPICQAPELVLKSCIADAACVMFLGYSENENHRDYAWVEYGMIFPFMEYVDRFQRQSELSSCKSSEFQKAIEEAFLADQGFTEKLIADINTAACNNGYSDSILKGFREVDGSNQNEGCHFLSQDLFDKKKDNRPCEVCGLDLPFKTPKKTKDLNPGSQFLCKTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLGGTDYFCPTCKVKFNFELSDSEKSQPKVKWNKNSGQLVLPNKVTVLCNGVEGIYFPSLHLVVCKCGFCETEKQALPEWERHTGSKFRNWRTSIRVKGSMLSLEQWMLQLAEFHAKAVVSIKPKKPSLKERKQKLLTFLQEKYEPVCAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPDIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCSEKNGKQTTRMISYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKKKAGSRLISSNRAKVEDIPPADNTGHEPFSAARCRIFQRTNHTKKRAADEAIAHQVRGHYHHPLDAIHSLNAYRAVNEPQAFSSFKERLCYLQRTENERVCFGRSGIHGWGLFARRNIQEGEMQVLEYRGEQVRRSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIALIAKTNVSAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1488g00012 1039 Gene3D - 213 319 - -
Gabi1488g00012 1039 Pfam PHD-finger 618 652 - -
Gabi1488g00012 1039 Gene3D SET domain 836 1039 IPR046341 -
Gabi1488g00012 1039 SUPERFAMILY SET domain 886 1039 IPR046341 -
Gabi1488g00012 1039 ProSitePatterns Zinc finger PHD-type signature. 606 651 IPR019786 -
Gabi1488g00012 1039 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1039 IPR025780 -
Gabi1488g00012 1039 SMART set_7 896 1020 IPR001214 GO:0005515
Gabi1488g00012 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 598 654 IPR013083 -
Gabi1488g00012 1039 ProSiteProfiles Post-SET domain profile. 1023 1039 IPR003616 -
Gabi1488g00012 1039 Pfam PWWP domain 219 312 IPR000313 -
Gabi1488g00012 1039 FunFam Histone-lysine N-methyltransferase 593 654 - -
Gabi1488g00012 1039 Pfam PHD-finger 411 464 IPR019787 -
Gabi1488g00012 1039 Pfam PHD-zinc-finger like domain 659 771 - -
Gabi1488g00012 1039 PANTHER PHD FINGER PROTEINS 95 483 - -
Gabi1488g00012 1039 SMART PostSET_3 1023 1039 IPR003616 -
Gabi1488g00012 1039 SUPERFAMILY FYVE/PHD zinc finger 604 668 IPR011011 -
Gabi1488g00012 1039 CDD PHD_ATX3_4_5_like 605 651 IPR042011 -
Gabi1488g00012 1039 MobiDBLite consensus disorder prediction 73 100 - -
Gabi1488g00012 1039 CDD SET_SETD1-like 885 1035 - -
Gabi1488g00012 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 406 466 IPR013083 -
Gabi1488g00012 1039 SMART PHD_3 716 772 IPR001965 -
Gabi1488g00012 1039 SMART PHD_3 411 463 IPR001965 -
Gabi1488g00012 1039 SMART PHD_3 605 652 IPR001965 -
Gabi1488g00012 1039 Pfam SET domain 907 1013 IPR001214 GO:0005515
Gabi1488g00012 1039 FunFam Histone-lysine N-methyltransferase 871 1039 - -
Gabi1488g00012 1039 SUPERFAMILY FYVE/PHD zinc finger 410 467 IPR011011 -
Gabi1488g00012 1039 ProSiteProfiles Zinc finger PHD-type profile. 409 465 IPR019787 -
Gabi1488g00012 1039 ProSiteProfiles SET domain profile. 896 1014 IPR001214 GO:0005515
Gabi1488g00012 1039 CDD PWWP_AtATX3-like 217 321 - -
Gabi1488g00012 1039 ProSiteProfiles PWWP domain profile. 218 287 IPR000313 -
Gabi1488g00012 1039 ProSiteProfiles Zinc finger PHD-type profile. 603 654 IPR019787 -
Gabi1488g00012 1039 FunFam Histone-lysine N-methyltransferase 655 774 - -
Gabi1488g00012 1039 ProSiteProfiles Extended PHD (ePHD) domain profile. 657 772 IPR034732 -
Gabi1488g00012 1039 SUPERFAMILY Tudor/PWWP/MBT 211 315 - -
Gabi1488g00012 1039 CDD PHD_TCF19_like 412 462 - -
Gabi1488g00012 1039 CDD ePHD_ATX3_4_5_like 660 771 IPR041955 -
Gabi1488g00012 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 655 774 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1488g00012 Gabi-Chr1488 126768 137149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1488g00012 606 771 C2H2 Transcription Factor Family AT3G14740 32.759 1.52e-19 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi1488g00012 zf-HC5HC2H_2 2.2e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1488g00012 - - gmx:100775276 1700.64