Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1488g00002 ATGCTTGTGCTCCCTACAACTTCGCATCCAATAAAATTCCTTGTTTCTTACATAAACTACGAAGCTCAGCTAATTTATGTGCAAGACCCTGAAAATTGCCTTCCGAACAAGTTTCTAAAACTCAACAATTTGTCAATTCAACCTTACCACTTATATGACGGAGTAGCACAAAACATCAACTACTTCAACTGTTCTTCAGTTGGGCATCCACACCTGAGAAACAGCATCCAGTCATCCTCAGATTCACAGGATATGATTTCCTGTCCGATTTACGTTTCTAATCCCTACGACAGTGTCCTTGAATTGGACCTTGTATCCTGTACCAAGATGTTCCACGTCAATGCATCGGTCACTGTGAACGAGCTGCAGATTAATATGTTGAGCATGAGGTGGTCCAAACCAGACTGTAGTGAGTGTGAAGAGAAGGGAAAGAGATGTAAATGGAAGAACAACAGCACACAAGGTGATATTGAATGTTTTGACTGCAAAGGCAAACGGAAACCAATCCACATTCCAACATCTTTTATTTTCTCAGCTACAGGTTCAATTCTGTTGGGGCTGGTGCTTATTACAGTCTTTAAGATCCATCGCTATTTTAGAAAGAAAGAAGAAGATCAGGCAAGAGTGGAGAAATTTTTAGAGGACTACAGAGCAGAAAAGCCTGCAAGATTTTCCTATGCTGATATAAAAAGAATGACGAGTGGTTTTAAGCAAAAGTTAGGGGAAGGAACTCACGGAGCAGTTTTCAAAGGAAAACTCTCCAATGAGATTCTGGTGGCTGTGAAGATCCTCAATAGTACTGAGGGAGAAGGGAAAGATTTCATCAACGAAGTTGGTATTATGGGCAAAATCCATCATATCAACGTGGTTCGTTTGCTTGGCTTCTGTGCAGAAGGACTTCATCGTGCTCTTGTCTACAATTTCTTTCAGAACGGTTCTTTACAAAACTTTATATTTCCACCAGATAACAAGGACCATTTTCTCGGTTGGGAGAAGCTGCAACAAGTTGCACATGGCATAGCTAAGGGGATTGAGTATCTTCATGTAGGTTGTAATCATCCAATCCTTCACTTTGACATCAATCCTCACAATGTGTTACTTGATGACAACTTCACTCCAAAGATTTCTGATTTTGGTCTGGCCAAATTGTGTTCCAAGAATCCAAGTCTAGTGTCCATGACAGCTGCTAGGGGAACCTTGGGATACATTGCACCCGAAGTTTTCTCCAGAAACTTTGGGAATGTGTCTTATAAGTCTGATATTTACAGTTATGGAATGTTGTTGCTAGAAATGGTTGGAGGAAGGAAGAACGTAGACATGTCATCTGATCAAACAAGCCAAGTTCTATACCCAGATTGGATCCATAACTTAATTGAAGGAGACATACGTATCCATATTGAGGAACAAGATGATGCTAAAATTGCAAAGAGACTTGCAATTGTTGGACTTTGGTGCATTCAGTGGAGACCGGTGAACCGTCCATCCATAAAGAATGTAATACAAATGCTGGAAACAGAAGAGGAAGACAAGTTAAGCGTGCCTCCTAATCCATTTCACTCAACCACTTCCATTACTACTGCTACTGAACTCACTCTGCTAAGACAACCTTTAGAGTTGGAAGTGATTCAGGAATGA 1635 0.4067 MLVLPTTSHPIKFLVSYINYEAQLIYVQDPENCLPNKFLKLNNLSIQPYHLYDGVAQNINYFNCSSVGHPHLRNSIQSSSDSQDMISCPIYVSNPYDSVLELDLVSCTKMFHVNASVTVNELQINMLSMRWSKPDCSECEEKGKRCKWKNNSTQGDIECFDCKGKRKPIHIPTSFIFSATGSILLGLVLITVFKIHRYFRKKEEDQARVEKFLEDYRAEKPARFSYADIKRMTSGFKQKLGEGTHGAVFKGKLSNEILVAVKILNSTEGEGKDFINEVGIMGKIHHINVVRLLGFCAEGLHRALVYNFFQNGSLQNFIFPPDNKDHFLGWEKLQQVAHGIAKGIEYLHVGCNHPILHFDINPHNVLLDDNFTPKISDFGLAKLCSKNPSLVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVDMSSDQTSQVLYPDWIHNLIEGDIRIHIEEQDDAKIAKRLAIVGLWCIQWRPVNRPSIKNVIQMLETEEEDKLSVPPNPFHSTTSITTATELTLLRQPLELEVIQE 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1488g00002 544 ProSitePatterns Protein kinases ATP-binding region signature. 240 262 IPR017441 GO:0005524
Gabi1488g00002 544 SUPERFAMILY Protein kinase-like (PK-like) 219 504 IPR011009 -
Gabi1488g00002 544 Gene3D Phosphorylase Kinase; domain 1 206 308 - -
Gabi1488g00002 544 Gene3D Transferase(Phosphotransferase) domain 1 309 515 - -
Gabi1488g00002 544 Pfam Protein tyrosine and serine/threonine kinase 236 503 IPR001245 GO:0004672|GO:0006468
Gabi1488g00002 544 FunFam PR5-like receptor kinase 309 515 - -
Gabi1488g00002 544 ProSiteProfiles Protein kinase domain profile. 234 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1488g00002 544 PANTHER RUST RESISTANCE KINASE LR10-RELATED 204 522 IPR045874 GO:0004672
Gabi1488g00002 544 FunFam serine/threonine-protein kinase PBS1-like 200 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1488g00002 Gabi-Chr1488 33841 35677 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1488g00002 7 517 Receptor kinase-like Gene Family AT5G38260 35.883 1.19e-95 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi1488g00002 PK_Tyr_Ser-Thr 5.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1488g00002 - - gmx:102662104 820.076