Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1484g00021 ATGACAGGGGACTCGGTACTCTCAAAATGCAAAAAGGCAAAAAAATCATTAGAGAAAAGCTTAGTCCAGATTCAGGGTATGGTTCCAGTTATGTTGGCTGCAGAGATTTCTGGAATAATTGATGATCTTGGGTGTGTGACATTTGTCCTGGATTCTGCTGAAGAAGAAGCTGGGAGGGTTGTGAGAGAATTGCTCCAGCAAAGTCCTGCAACCTCAGATAAAGATTCAATGGAAAATTCTGAAATTGAATCTCTTCAGTTTGCAGCGGCAAGACTTAATATTACATCCCCAACGACCATCTTAGTAGAGAAAAGATCTATAAAGAAGTTGTTAGAAAATGTGGGACCAAATGACCAGAGAAAAAAGATGATCTTGAAATATCTTTTGTATCTTCTTATAAAGTATGGAAACTTAATCAAGGGGGAACAAATGGAGAAGGTCTATTCTCATATTGAAGGACCAATTGCAACTGAGAACTCTGGTCATGATTCTCAATGCATCCATCATGTTAAGTCTGATCCATACTTGAACTATGATCAGTGTAGAACTCACACCAGCGAGTTGGGTAGAGTTACACCCCCAGAGGAATATACATGTCCAATATCTTCAAGGTTGATGTTTGACCCCGTTGTCATTGCATCAGGAGAAACATTTGAAAGGATGTGGATACAAAAGTGGTTTGATGAGGGTAATGCTATTTGCCCAAAAACTAAAAAGAAACTGGCCCATATGGCATTGACTCCTAACACTGCCATAAAGGACTTAATATTAAAGTGGTGCAAAAGTAATGGAGTCTCCATTCCTGACCCAAGTAGGGAAGATGAAGATTTTCACTCATGGGAAGCTTCCTCCACTTCCATTAGGAGTTTTGGAAGTTCTATGAATGATTTGAACTTTCCAATGGATCTTAGTAACATGTCACTTGGATCGTTTGATACTAGTCATAGTTCAGATTCCTCACATGCTCAAGCCAATCATGGCTTGAATTTGATGTTGATCAAGACTAGTGACAATTCTCACAGGCATCAATCTCATGCAGATATACATGACACAGACCTGATGCATTTGTCCAAACTCCATGATCGTCAATGGGATTCCCAATGTCAAGTCATTGAAGTTATGAAAGAAGATTTCGAATGCAATTACCAAGCTTTTTGCTCTGTGTCATCTGAGAATTTCGTTGACCCACTCATAAGATTCCTGAGCACTGCGTATGATATTCATGATGTGAAAGCTCTTAGAGCTGGAACTCAGTTGCTGTTGGAATTTATGAAAAACTGCAGAAATGATCTGACTAATTTAAGTGAAGATACATTCAGAATGCTGGCAACTCTTCTTGATTCAGAAGTGATTGAAGAAGCTCTTGTCATAATGGAAGAACTGTCTGGGAATTGTTATGATAAAGCTACCATTGCAGCTTCACATGCACTCCCTTCTGTTTCAAAGATCCTTGATTCTGGTAACAAAGAGTTCCAACGAAAGGCTTTTAGAATAATGTGCAATTTGTCATCCAATGGTGAAATTAGTCCCTACATGGTATCTCTCGGGTGCATCCCAAAATTGCTGCCATTTTTTGAAGACATGACCCTTTTGAGAGACTGTGTAAGTATATTGAAAAACCTTTGTGATACTGAAGAGGGTAGGGTTGCTTTTGTTGAAACTAAAGGATGCATATCTTATGTTGCTGAAATACTTGGGAGTGGCAGTGATGAGGAAAAAGAACTTTCACTGGCTATTCTACTCTCTTTATGTTCTCAACGTGTGGAGTACTGTGAGTTGGTTATGTATGAGGGGATTATCCCTTCTCTTGTTAATATCTCAAATAAAGGAAATGATAATGCAAAGGCATTTGCATTGGAACTGCTTCGTCTTTTGAGGGATGTTGACTACGTTGAGAATGAAGATTGCATTGAGCCAAATCTCAACACCTCTCGTGATTCTAACAATCAAGAAAAGAAGCCATCAAAGAAATCCATGTTTTTGAAGAAACTATCACTGTTCTCAAAGTCCAGTTCACTTTCATCAAAAAACAAGAGGTGA 2040 0.3877 MTGDSVLSKCKKAKKSLEKSLVQIQGMVPVMLAAEISGIIDDLGCVTFVLDSAEEEAGRVVRELLQQSPATSDKDSMENSEIESLQFAAARLNITSPTTILVEKRSIKKLLENVGPNDQRKKMILKYLLYLLIKYGNLIKGEQMEKVYSHIEGPIATENSGHDSQCIHHVKSDPYLNYDQCRTHTSELGRVTPPEEYTCPISSRLMFDPVVIASGETFERMWIQKWFDEGNAICPKTKKKLAHMALTPNTAIKDLILKWCKSNGVSIPDPSREDEDFHSWEASSTSIRSFGSSMNDLNFPMDLSNMSLGSFDTSHSSDSSHAQANHGLNLMLIKTSDNSHRHQSHADIHDTDLMHLSKLHDRQWDSQCQVIEVMKEDFECNYQAFCSVSSENFVDPLIRFLSTAYDIHDVKALRAGTQLLLEFMKNCRNDLTNLSEDTFRMLATLLDSEVIEEALVIMEELSGNCYDKATIAASHALPSVSKILDSGNKEFQRKAFRIMCNLSSNGEISPYMVSLGCIPKLLPFFEDMTLLRDCVSILKNLCDTEEGRVAFVETKGCISYVAEILGSGSDEEKELSLAILLSLCSQRVEYCELVMYEGIIPSLVNISNKGNDNAKAFALELLRLLRDVDYVENEDCIEPNLNTSRDSNNQEKKPSKKSMFLKKLSLFSKSSSLSSKNKR 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1484g00021 679 CDD RING-Ubox_PUB 194 243 IPR045210 -
Gabi1484g00021 679 Gene3D - 358 643 IPR011989 -
Gabi1484g00021 679 SUPERFAMILY ARM repeat 357 626 IPR016024 -
Gabi1484g00021 679 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 267 IPR013083 -
Gabi1484g00021 679 PANTHER U BOX DOMAIN-CONTAINING 6 631 - -
Gabi1484g00021 679 SUPERFAMILY RING/U-box 186 270 - -
Gabi1484g00021 679 Pfam Kinesin-associated protein (KAP) 411 584 - -
Gabi1484g00021 679 Pfam U-box domain 194 263 IPR003613 GO:0004842|GO:0016567
Gabi1484g00021 679 SMART Ubox_2 196 259 IPR003613 GO:0004842|GO:0016567
Gabi1484g00021 679 MobiDBLite consensus disorder prediction 639 658 - -
Gabi1484g00021 679 ProSiteProfiles U-box domain profile. 192 266 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1484g00021 Gabi-Chr1484 171468 176240 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1484g00021 1 635 U-box Gene Family AT4G36550 35.814 7.55e-107 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1484g00021 - - gmx:100798951 927.161