Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1484g00020 ATGGGAACTGATGGTTGTGAAGTAGTACAGACATTACCAAATCCCCTCTCCTTTAAGGTACATCGTACAATGTGCACAGAACTGAAGAAATTAGTTGATAGAGTCTTAAGGATATTTCCACGTATAGAGGAAGCACGCCCTCGATCCTCATCAGGAATACAGTCTCTGTGTTTGCTAAACAGTGCAATTGATACAGCCAAACAACTTCTGCAACATTGCTCCGAATCTAGTAAACTATACCTGGCAATGACAGGGGACTCGGTACTCTCAAAATGCAAAAAGGCAAAAAAATCATTAGAGAAAAGCTTAGTCCAGATTCAGGGTATGGTTCCAGTTATGTTGGCTGCAGAGATTTCTGGAATAATTGATGATCTTGGGTGTGTGACATTTGTCCTGGATTCTGCTGAAGAAGAAGCTGGGAGGGTTGTGAGAGAATTGCTCCAGCAAAGTCCTGCAACCTCAGATAAAGATTCAATGGAAAATTCTGAAATTGAATCTCTTCAGTTTGCAGCGGCAAGACTTAATATTACATCCCCAACGACCATCTTAGTAGAGAAAAGATCTATAAAGAAGTTGTTAGAAAATGTGGGACCAAATGACCAGAGAAAAAAGATGATCTTGAAATATCTTTTGTATCTTCTTATAAAGTATGGAAACTTAATCAAGGGGGAACAAATGGAGAAGGTCTATTCTCATATTGAAGGACCAATTGCAACTGAGAACTCTGGTCATGATTCTCAATGCATCCATCATGTTAAGTCTGATCCATACTTGAACTATGATCAGTGTAGAACTCACACCAGCGAGTTGGGTAGAGTTACACCCCCAGAGGAATATACATGTCCAATATCTTCAAGGTTGATGTTTGACCCCGTTGTCATTGCATCAGGAGAAACATTTGAAAGGATGTGGATACAAAAGTGGTTTGATGAGGGTAATGCTATTTGCCCAAAAACTAAAAAGAAACTGGCCCATATGGCATTGACTCCTAACACTGCCATAAAGGACTTAATATTAAAGTGGTGCAAAAGTAATGGAGTCTCCATTCCTGACCCAAGTAGGGAAGATGAAGATTTTCACTCATGGGAAGCTTCCTCCACTTCCATTAGGAGTTTTGGAAGTTCTATGAATGATTTGAACTTTCCAATGGATCTTAGTAACATGTCACTTGGATCGTTTGATACTAGTCATAGTTCAGATTCCTCACATGCTCAAGCCAATCATGGCTTGAATTTGATGTTGATCAAGACTAGTGACAATTCTCACAGGCATCAATCTCATGCAGATATACATGACACAGACCTGATGCATTTGTCCAAACTCCATGATCGTCAATGGGATTCCCAATGTCAAGTCATTGAAGTTATGAAAGAAGATTTCGAATGCAATTACCAAGCTTTTTGCTCTGTGTCATCTGAGAATTTCGTTGACCCACTCATAAGATTCCTGAGCACTGCGTATGATATTCATGATGTGAAAGCTCTTAGAGCTGGAACTCAGTTGCTGTTGGAATTTATGAAAAACTGCAGAAATGATCTGACTAATTTAAGTGAAGATACATTCAGAATGCTGGCAACTCTTCTTGATTCAGAAGTGATTGAAGAAGCTCTTGTCATAATGGAAGAACTGTCTGGGAATTGTTATGATAAAGCTACCATTGCAGCTTCACATGCACTCCCTTCTGTTTCAAAGATCCTTGATTCTGGTAACAAAGAGTTCCAACGAAAGGCTTTTAGAATAATGTGCAATTTGTCATCCAATGGTGAAATTAGTCCCTACATGGTATCTCTCGGGTGCATCCCAAAATTGCTGCCATTTTTTGAAGACATGACCCTTTTGAGAGACTGTGTAAGTATATTGAAAAACCTTTGTGATACTGAAGAGGGTAGGGTTGCTTTTGTTGAAACTAAAGGATGCATATCTTATGTTGCTGAAATACTTGGGAGTGGCAGTGATGAGGAAAAAGAACTTTCACTGGCTATTCTACTCTCTTTATGTTCTCAACGTGTGGAGTACTGTGAGTTGGTTATGTATGAGGGGATTATCCCTTCTCTTGTTAATATCTCAAATAAAGGAAATGATAATGCAAAGGCATTTGCATTGGAACTGCTTCGTCTTTTGAGGGATGTTGACTACGTTGAGAATGAAGATTGCATTGAGCCAAATCTCAACACCTCTCGTGATTCTAACAATCAAGAAAAGAAGCCATCAAAGAAATCCATGTTTTTGAAGAAACTATCACTGTTCTCAAAGTCCAGTTCACTTTCATCAAAAAACAAGAGGTGA 2286 0.3906 MGTDGCEVVQTLPNPLSFKVHRTMCTELKKLVDRVLRIFPRIEEARPRSSSGIQSLCLLNSAIDTAKQLLQHCSESSKLYLAMTGDSVLSKCKKAKKSLEKSLVQIQGMVPVMLAAEISGIIDDLGCVTFVLDSAEEEAGRVVRELLQQSPATSDKDSMENSEIESLQFAAARLNITSPTTILVEKRSIKKLLENVGPNDQRKKMILKYLLYLLIKYGNLIKGEQMEKVYSHIEGPIATENSGHDSQCIHHVKSDPYLNYDQCRTHTSELGRVTPPEEYTCPISSRLMFDPVVIASGETFERMWIQKWFDEGNAICPKTKKKLAHMALTPNTAIKDLILKWCKSNGVSIPDPSREDEDFHSWEASSTSIRSFGSSMNDLNFPMDLSNMSLGSFDTSHSSDSSHAQANHGLNLMLIKTSDNSHRHQSHADIHDTDLMHLSKLHDRQWDSQCQVIEVMKEDFECNYQAFCSVSSENFVDPLIRFLSTAYDIHDVKALRAGTQLLLEFMKNCRNDLTNLSEDTFRMLATLLDSEVIEEALVIMEELSGNCYDKATIAASHALPSVSKILDSGNKEFQRKAFRIMCNLSSNGEISPYMVSLGCIPKLLPFFEDMTLLRDCVSILKNLCDTEEGRVAFVETKGCISYVAEILGSGSDEEKELSLAILLSLCSQRVEYCELVMYEGIIPSLVNISNKGNDNAKAFALELLRLLRDVDYVENEDCIEPNLNTSRDSNNQEKKPSKKSMFLKKLSLFSKSSSLSSKNKR 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1484g00020 761 MobiDBLite consensus disorder prediction 721 740 - -
Gabi1484g00020 761 Gene3D - 440 725 IPR011989 -
Gabi1484g00020 761 ProSiteProfiles U-box domain profile. 274 348 IPR003613 GO:0004842|GO:0016567
Gabi1484g00020 761 SMART Ubox_2 278 341 IPR003613 GO:0004842|GO:0016567
Gabi1484g00020 761 SUPERFAMILY ARM repeat 439 708 IPR016024 -
Gabi1484g00020 761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 349 IPR013083 -
Gabi1484g00020 761 PANTHER U BOX DOMAIN-CONTAINING 23 713 - -
Gabi1484g00020 761 Pfam U-box domain 276 345 IPR003613 GO:0004842|GO:0016567
Gabi1484g00020 761 CDD RING-Ubox_PUB 276 325 IPR045210 -
Gabi1484g00020 761 Pfam Kinesin-associated protein (KAP) 493 666 - -
Gabi1484g00020 761 SUPERFAMILY RING/U-box 268 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1484g00020 Gabi-Chr1484 171468 176962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1484g00020 15 717 U-box Gene Family AT4G36550 38.990 1.70e-144 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1484g00020 - - gmx:100798951 1048.5