Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1484g00019 ATGGGAACTGATGGTTGTGAAGTAGTACAGACATTACCAAATCCCCTCTCCTTTAAGGCAATGACAGGGGACTCGGTACTCTCAAAATGCAAAAAGGCAAAAAAATCATTAGAGAAAAGCTTAGTCCAGATTCAGGGTATGGTTCCAGTTATGTTGGCTGCAGAGATTTCTGGAATAATTGATGATCTTGGGTGTGTGACATTTGTCCTGGATTCTGCTGAAGAAGAAGCTGGGAGGGTTGTGAGAGAATTGCTCCAGCAAAGTCCTGCAACCTCAGATAAAGATTCAATGGAAAATTCTGAAATTGAATCTCTTCAGTTTGCAGCGGCAAGACTTAATATTACATCCCCAACGACCATCTTAGTAGAGAAAAGATCTATAAAGAAGTTGTTAGAAAATGTGGGACCAAATGACCAGAGAAAAAAGATGATCTTGAAATATCTTTTGTATCTTCTTATAAAGTATGGAAACTTAATCAAGGGGGAACAAATGGAGAAGGTCTATTCTCATATTGAAGGACCAATTGCAACTGAGAACTCTGGTCATGATTCTCAATGCATCCATCATGTTAAGTCTGATCCATACTTGAACTATGATCAGTGTAGAACTCACACCAGCGAGTTGGGTAGAGTTACACCCCCAGAGGAATATACATGTCCAATATCTTCAAGGTTGATGTTTGACCCCGTTGTCATTGCATCAGGAGAAACATTTGAAAGGATGTGGATACAAAAGTGGTTTGATGAGGGTAATGCTATTTGCCCAAAAACTAAAAAGAAACTGGCCCATATGGCATTGACTCCTAACACTGCCATAAAGGACTTAATATTAAAGTGGTGCAAAAGTAATGGAGTCTCCATTCCTGACCCAAGTAGGGAAGATGAAGATTTTCACTCATGGGAAGCTTCCTCCACTTCCATTAGGAGTTTTGGAAGTTCTATGAATGATTTGAACTTTCCAATGGATCTTAGTAACATGTCACTTGGATCGTTTGATACTAGTCATAGTTCAGATTCCTCACATGCTCAAGCCAATCATGGCTTGAATTTGATGTTGATCAAGACTAGTGACAATTCTCACAGGCATCAATCTCATGCAGATATACATGACACAGACCTGATGCATTTGTCCAAACTCCATGATCGTCAATGGGATTCCCAATGTCAAGTCATTGAAGTTATGAAAGAAGATTTCGAATGCAATTACCAAGCTTTTTGCTCTGTGTCATCTGAGAATTTCGTTGACCCACTCATAAGATTCCTGAGCACTGCGTATGATATTCATGATGTGAAAGCTCTTAGAGCTGGAACTCAGTTGCTGTTGGAATTTATGAAAAACTGCAGAAATGATCTGACTAATTTAAGTGAAGATACATTCAGAATGCTGGCAACTCTTCTTGATTCAGAAGTGATTGAAGAAGCTCTTGTCATAATGGAAGAACTGTCTGGGAATTGTTATGATAAAGCTACCATTGCAGCTTCACATGCACTCCCTTCTGTTTCAAAGATCCTTGATTCTGGTAACAAAGAGTTCCAACGAAAGGCTTTTAGAATAATGTGCAATTTGTCATCCAATGGTGAAATTAGTCCCTACATGGTATCTCTCGGGTGCATCCCAAAATTGCTGCCATTTTTTGAAGACATGACCCTTTTGAGAGACTGTGTAAGTATATTGAAAAACCTTTGTGATACTGAAGAGGGTAGGGTTGCTTTTGTTGAAACTAAAGGATGCATATCTTATGTTGCTGAAATACTTGGGAGTGGCAGTGATGAGGAAAAAGAACTTTCACTGGCTATTCTACTCTCTTTATGTTCTCAACGTGTGGAGTACTGTGAGTTGGTTATGTATGAGGGGATTATCCCTTCTCTTGTTAATATCTCAAATAAAGGAAATGATAATGCAAAGGCATTTGCATTGGAACTGCTTCGTCTTTTGAGGGATGTTGACTACGTTGAGAATGAAGATTGCATTGAGCCAAATCTCAACACCTCTCGTGATTCTAACAATCAAGAAAAGAAGCCATCAAAGAAATCCATGTTTTTGAAGAAACTATCACTGTTCTCAAAGTCCAGTTCACTTTCATCAAAAAACAAGAGGTGA 2100 0.389 MGTDGCEVVQTLPNPLSFKAMTGDSVLSKCKKAKKSLEKSLVQIQGMVPVMLAAEISGIIDDLGCVTFVLDSAEEEAGRVVRELLQQSPATSDKDSMENSEIESLQFAAARLNITSPTTILVEKRSIKKLLENVGPNDQRKKMILKYLLYLLIKYGNLIKGEQMEKVYSHIEGPIATENSGHDSQCIHHVKSDPYLNYDQCRTHTSELGRVTPPEEYTCPISSRLMFDPVVIASGETFERMWIQKWFDEGNAICPKTKKKLAHMALTPNTAIKDLILKWCKSNGVSIPDPSREDEDFHSWEASSTSIRSFGSSMNDLNFPMDLSNMSLGSFDTSHSSDSSHAQANHGLNLMLIKTSDNSHRHQSHADIHDTDLMHLSKLHDRQWDSQCQVIEVMKEDFECNYQAFCSVSSENFVDPLIRFLSTAYDIHDVKALRAGTQLLLEFMKNCRNDLTNLSEDTFRMLATLLDSEVIEEALVIMEELSGNCYDKATIAASHALPSVSKILDSGNKEFQRKAFRIMCNLSSNGEISPYMVSLGCIPKLLPFFEDMTLLRDCVSILKNLCDTEEGRVAFVETKGCISYVAEILGSGSDEEKELSLAILLSLCSQRVEYCELVMYEGIIPSLVNISNKGNDNAKAFALELLRLLRDVDYVENEDCIEPNLNTSRDSNNQEKKPSKKSMFLKKLSLFSKSSSLSSKNKR 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1484g00019 699 PANTHER U BOX DOMAIN-CONTAINING 26 651 - -
Gabi1484g00019 699 CDD RING-Ubox_PUB 214 263 IPR045210 -
Gabi1484g00019 699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 287 IPR013083 -
Gabi1484g00019 699 Gene3D - 378 663 IPR011989 -
Gabi1484g00019 699 ProSiteProfiles U-box domain profile. 212 286 IPR003613 GO:0004842|GO:0016567
Gabi1484g00019 699 SUPERFAMILY RING/U-box 206 290 - -
Gabi1484g00019 699 Pfam Kinesin-associated protein (KAP) 431 604 - -
Gabi1484g00019 699 SUPERFAMILY ARM repeat 377 646 IPR016024 -
Gabi1484g00019 699 Pfam U-box domain 214 283 IPR003613 GO:0004842|GO:0016567
Gabi1484g00019 699 SMART Ubox_2 216 279 IPR003613 GO:0004842|GO:0016567
Gabi1484g00019 699 MobiDBLite consensus disorder prediction 659 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1484g00019 Gabi-Chr1484 171468 176962 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1484g00019 18 655 U-box Gene Family AT4G36550 35.802 1.20e-107 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1484g00019 - - gmx:100798951 929.087